XLOC_002893 (rfc3)


Basic Information

Item Value
gene id XLOC_002893
gene name rfc3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34021368 ~ 34033680 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005341
CCCTCgaaagaataaactcagtcggaaGGATGAGAAAACAGAAACTTTCAATGTTACAGAATAATTTTACAGAGCGGCACACGTCACATCAGCCggtgtgtgaatgaagtgcttgatGCATCACTGCCCTGTgtgcccgtccgctacgccactgaccgTCCAACAGATGGCCTACAGTACATTAGTTCTTCATTTTACAAAACGCAAAAGCACCCCTTGTCCCTCCTCGCTTCCTGTAGTTGCCGCTCTGACAGCGCGCTGCGCGGGTTTGTGTTTCGCGGGAGCAGGCGGATGACAATAACATCATATTATTTACTTCTTCCACGGGTACATTACTGTCATCATTTCAACTGAAAAATGAGTTTATGGGTGGACAAATACCGACCGACGTCCTTGGCTAAACTGGACTACCACAAGGAGCAAGCTAACCAGCTCAAAAATCTGGTTCAGTGTGGCGATTTTCCTCATTTGTTGGTTTATGGACCCTCTGGAGCTGGCAAGAAAACTCGGATCATGTGTTTGCTTCGAGAGCTTTATGGAGCCGGGGTGGAGAAACTCAGGATTGAACATCAGTCTATCACGACTCCATCAAAAAAGAAGCTTGAAATCAACACTATTGCCAGCAACTACCATCTAGAGGTGAATCCAAGtGATGCCGGGAACAGTGACCGCGTGGTCATTCAGGAGCTGATAAAAACAGTCGCACAGTCTCAGCAGATTCAGTCCAGCGCTCAGAGGGAGTTCAAAGTGGTGCTGCTCACGGAGGTGGACCGCCTCACTAAAGATGCCCAGCATGCCTTGCGCCGTACGATGGAGAAGTACATGGCCACTTGTCGACTGATCCTCTGCTGTAACTCCACGTCAAAAGTAATCGCCCCCATCAGGAGCAGGTGTCTGGCTGTGAGGGTCCCTCTGCCAAGTGTGGAAGAGGTGTGCAGTGTCCTGTCAGGCGTGTGCAGGAAGGAGGGTCTGCTGCTTCCTCCAGAACTGGCCAAACAAATCGCAGAGAAATCTGGCCGTAACCTCCGTAAGGCCCTGCTGATGTGCGAGGCCTGCAGAGTTCAACAGTATCCCTTCTCTCCAGACCAGGACATCCCAGAGACAGACTGGGAGGTTTACCTCAGAGAGACCGCTAATGCTATAGTTAGCCAGCAAAGCCCTCAGAGGCTTTTGGAAGTTCGTGCACGATTGTATGAACTTCTAACTCACTGCATCCCACCAGAAGTCATCATGAAGGGTCTGGTGACTGAGTTGTTGAGTAACTGTGATGGACACCTGAAGGCTGAAGTGGCTCAGATGGCGGCCTACTATGAACACAGACTGCAGCTGGGCAACAAAGCCATCTACCACCTGGAGGCCTTCGTCGCAAAATTCATGGCCATCTACAAGAAGTTTATGGAAGATGGGCTTGACAACTTTATGTTCTAAGGAAATGTAAATGAGAGATTATATTactgtttttcataataaaagacaTCTACAAATGTTTGTGACCGGTTGTTATTGTCACTGGGAATGTCGTTAAAGGGGTACAGAATTCTGGATATGTGTGAAATAAGCAAAATATTGACAACAAAGCACAAATACAATGAAAACTGGGAACTTCAGAGACaatcatttaaaaagtgcaaataaGTTACAGTTAATCTTAAAAAGCAATGATACACAAGTGGACTTGTGATGACAATTAGACAGTTAACAATTATTTAATACCCATGTGATCATGTAATTTACACATCAGAAAATACATGACCTGTTCTAAAGAGACGCTTcatccagaaatgaaaattctgtcatcacatACTCAACTTTACCCGTTAACCTTCTTTTCTTGTGTTAAACATGAAAggagatattatgaagaatgctggaaacctgaaaccattgacaATATTTATGtttcctactatgtaagtcaatagttacaggttttcagcgtttttttaaatatcttctttcatgtttgACACGAAACACATGAAGGTGTGATATAGATCAGGGATGTCCACTtacgctcctggagggccggtgtcctggagagtttagctccaacccaatccaagacacctgaaccagctaaccaagctcttactagatatactaaaacaggtgtccaaactcagtccgggagggccggtgtccttaaaaatttagctccaactctcCTCAAAACACCTGCCAGGACATTTCAAGTGAGCAAAGTAAGTGCTTGATTACTGGCTtgggtgtgtctgattggggatACAGCTAAACTATGCTGAACGCTGGCCTTCCAGGACCGGATCTGAACACCcctgtactagaaacttccttgctggtgtgttgaagcaagttgcagctaaactcagcaggacattggccctccaggacagagtttggacacccctgatatagatATTTTTAGTTTGGTAAATAGTGAATAcgctttcatttttgggtgaactatccctttaacatcacTTATTTACACTAATCATACTAAGAACCTCTATAACATGCCAAACAAATACAATACATTTCCCTTATAAATGTTTTATCGTGCAAAAACCAAACTGCCGTGCAAACTTGACAAAACAACGCAAATATCttactttttacaaataaataaggaTTTTAAAGCTAGCCATTACATAACTATCCTGGGGACTCGTTTATAAAAATGTGTAttcatttatacacatttaattCAGAGAAATGAACGTTTTAGATAGCCACTTTACAAACTCCCCCAattaaaggggatagttcacccaaaaaacaaaacttttctcaTCATGTACTCACCCGCCATTTGATCTAAACCTGTTTTTGGttcttacttctgttgaacataaagaaGATATTTATGGCTGCCAGTTTCaaacgttcttcaaaatatcttatttagtgttcaacagattaaagaaactttaacaaaggtttggaaccacttgagagtgagtacaTTATGACAAATCCTTCTCTCATTTTTtcaggtgaactatctctttatatGAGCACCAGTCCAAATTCCAAATCTTTAGCTTGAGAATGGCAAGGGGCAAAACCCAATTTGTGCAGATTTACGTTTTATAAATAGCATACATTAGGGCTTTTCACACCTGAATtagttaaccctgggtcattttTACTCTGGATAAATGTAATCCTGTGATATATAATCCTGTTTACTccatctgatgcatttttatatttaataacaattGTCATTATTGCCTTTAAACACTAAAACACCAATTTCTATATAGTTTATGCCGTTTCTGTGACATAAATAAGTGACGAGTGGTCTTAATGTAACATTCAAAGGCCATATAATTTCAGGCTGAATGTTTAGGGTTAAGCACAGAACTGGTGCTTCTAAATCACAAATATGAAACACTTCTTTACCTGCGGTTAAAACTGGGGTTTAGTACAagacatgggctggtataagattctgattaTATGATAACCTCACATAAAAACATCGGATTTactgtattgtaattactgccctaaaattttttttaaatgtcagggtaaaaaacaacaatctTTTCACCCCATTGAACACAGTATGTTTTATATTAAGaagcatttataatgttttaaaacagtaaacaggttaaaataattaatgtcaggttaaatgattaaaataaatgattgacttCTGTGGTCTTCAATAGTTTCAAAAACATAAAGATTTTTTAACCTgtaaaggcagaacattttaggggttttaaaaccttgacttttccttgACTTTAACTTGGATAAACTGGTTATCATCACGTGCCGATTTAATACAACAAAAACTCAGGGTTAAGCACAGTGTGAAGAGACCTACAGTAATGAGAAAAccactaaataaattaaaagtgtCAGCAGAGCTGTATCAATCATTTTTTGGTGGTTAACTTGTGCCTCTTAAATGCATAGTAGATAACAAGGCACATAGTGATGAGCATGCAGGAGCTCACCAGAGAGAGAAAGCCGACCACAGGCTTCTTGGTGAGGACATATCGGCCCGATCCTTGAGCTGGAGCATGGGGACACTGATGCTGAGATGTGCTTGGGGCTGGGAAGCCATTGTGGCGGATAATGTTTTTGTAATGGCCCAGTGAGGATTTTGAAATCACCTCTTCCTGCACGTGACCATACATGCCAAAGCCTGGGTCCCGCTGGTCACTGAATGCGTATGCAAAATAGCCTTTTAGATTCACTGCATCCAGCATgtatgctaaaaaaaaacagatcagagGTTAGAAAATGACCGTAGTGAACTCATGACGTAACTATAAATCGAATTCAGATACCAAGATAAATGAGGCCAATGTTTTGGGAatagtaaacaaatattttccaaaGCTCAGATGAAGAGCGGTgtg
>TCONS_00005342
CTCGCTTCCTGTAGTTGCCGCTCTGACAGCGCGCTGCGCGGGTTTGTGTTTCGCGGGAGCAGGCGGATGACAATAACATCATATTATTTACTTCTTCCACGGGTACATTACTGTCATCATTTCAACTGAAAAATGAGTTTATGGGTGGACAAATACCGACCGACGTCCTTGGCTAAACTGGACTACCACAAGGAGCAAGCTAACCAGCTCAAAAATCTGGTTCAGTGTGGCGATTTTCCTCATTTGTTGGTTTATGGACCCTCTGGAGCTGGCAAGAAAACTCGGATCATGTGTTTGCTTCGAGAGCTTTATGGAGCCGGGGTGGAGAAACTCAGGATTGAACATCAGTCTATCACGACTCCATCAAAAAAGAAGCTTGAAATCAACACTATTGCCAGCAACTACCATCTAGAGGTGAATCCAAGtGATGCCGGGAACAGTGACCGCGTGGTCATTCAGGAGCTGATAAAAACAGTCGCACAGTCTCAGCAGATTCAGTCCAGCGCTCAGAGGGAGTTCAAAGTGGTGCTGCTCACGGAGGTGGACCGCCTCACTAAAGATGCCCAGCATGCCTTGCGCCGTACGATGGAGAAGTACATGGCCACTTGTCGACTGATCCTCTGCTGTAACTCCACGTCAAAAGTAATCGCCCCCATCAGGAGCAGGTGTCTGGCTGTGAGGGTCCCTCTGCCAAGTGTGGAAGAGGTGTGCAGTGTCCTGTCAGGCGTGTGCAGGAAGGAGGGTCTGCTGCTTCCTCCAGAACTGGCCAAACAAATCGCAGAGAAATCTGGCCGTAACCTCCGTAAGGCCCTGCTGATGTGCGAGGCCTGCAGAGTTCAACActttatttatttgcatatactGGAGACTAAATTAATTCATATTTGCAGGCTTTTGGAAGTTCGTGCACGATTGTATGAACTTCTAACTCACTGCATCCCACCAGAAGTCATCATGAAGGGTCTGGTGACTGAGTTGTTGAGTAACTGTGATGGACACCTGAAGGCTGAAGTGGCTCAGATGGCGGCCTACTATGAACACAGACTGCAGCTGGGCAACAAAGCCATCTACCACCTGGAGGCCTTCGTCGCAAAATTCATGGCCATCTACAAGAAGTTTATGGAAGATGGGCTTGACAACTTTATGTTCTAAGGAAATGTAAATGAGAGATTATATTactgtttttcataataaaagacaTCTACAAA
>TCONS_00005343
TGCGCGGGTTTGTGTTTCGCGGGAGCAGGCGGATGACAATAACATCATATTATTTACTTCTTCCACGGGTACATTACTGTCATCATTTCAACTGAAAAATGAGTTTATGGGTGGACAAATACCGACCGACGTCCTTGGCTAAACTGGACTACCACAAGGAGCAAGCTAACCAGCTCAAAAATCTGGTTCAGTGTGGCGATTTTCCTCATTTGTTGGTTTATGGACCCTCTGGAGCTGGCAAGAAAACTCGGATCATGTGTTTGCTTCGAGAGCTTTATGGAGCCGGGGTGGAGAAACTCAGGATTGAACATCAGTCTATCACGGTATTTTTAAGAAAGAAagctgcttaaagggatagttcacccaacaatgaaCATTTCCTTACCATTTACATAAACTCATTTGGTTCTAAACTTGAACGTCtttcacaaaacacaaaataagatattttgaagaatgttgtggaaaaagcagccattgaccttcatattagggctgcactatattgaaaaaatctgatagttatgttttattttactgcgaaaaatattgtaatacagtttcacaagattgTTTGAATTGCACTATTTGATTTTTGGaggtctaacagtattcaatGCAAAAAATTGAATAATCctaatgcaaaaaatgcttttaaaatatcaagtaaaatattattttgttttcacctagtttttccttcaaacaagcaaaaatatcTGCCAATGGTGAAAgtaaaattttcttttttctttgaaatgtagatatttggactagaaacaagacaaaagttctaagaaaaactttttttgttgtataaattccgtataaatgattaaatactataaccagtgg

Function

symbol description
rfc3 Predicted to enable DNA binding activity. Predicted to contribute to DNA clamp loader activity. Predicted to be involved in DNA repair and DNA-dependent DNA replication. Predicted to act upstream of or within DNA replication. Predicted to be part of DNA replication factor C complex. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; head; immature eye; optic tectum; and pectoral fin musculature. Orthologous to human RFC3 (replication factor C subunit 3).

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005663 DNA replication factor C complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003689 DNA clamp loader activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020809-3 Predicted to enable DNA binding activity. Predicted to contribute to DNA clamp loader activity. Predicted to be involved in DNA repair and DNA-dependent DNA replication. Predicted to act upstream of or within DNA replication. Predicted to be part of DNA replication factor C complex. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; head; immature eye; optic tectum; and pectoral fin musculature. Orthologous to human RFC3 (replication factor C subunit 3).

Ensembl:

ensembl_id ENSDARG00000055969

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005341 False 4370 mRNA 0.41 9 34021368 34033680
TCONS_00005342 False 1208 mRNA 0.48 8 34024254 34033455
TCONS_00005343 True 855 processed_transcript 0.35 2 34032283 34033421

Neighbor

gene id symbol gene type direction distance location
XLOC_002892 zar1l coding downstream 19183 33999869 ~ 34002185 (-)
XLOC_002891 BX569785.1 coding downstream 141004 33876131 ~ 33880364 (-)
XLOC_002890 NA coding downstream 356579 33663165 ~ 33664789 (-)
XLOC_002889 hunk coding downstream 399629 33614377 ~ 33621739 (-)
XLOC_002888 eva1c coding downstream 433058 33580285 ~ 33588310 (-)
XLOC_002894 pimr149 coding upstream 9881 34043561 ~ 34046757 (-)
XLOC_002895 BX548044.8 coding upstream 25327 34059007 ~ 34067286 (-)
XLOC_002896 pimr144 coding upstream 52911 34086591 ~ 34107919 (-)
XLOC_002897 pimr150 coding upstream 86863 34120543 ~ 34150672 (-)
XLOC_002898 pimr145 coding upstream 137994 34171674 ~ 34223567 (-)
XLOC_002885 dre-mir-130a non-coding downstream 644154 33377130 ~ 33377214 (-)
XLOC_002884 dre-mir-301a non-coding downstream 644282 33377001 ~ 33377086 (-)
XLOC_002883 dre-mir-454a non-coding downstream 644427 33376818 ~ 33376941 (-)
XLOC_002900 NA non-coding upstream 163102 34196782 ~ 34198566 (-)
XLOC_002902 BX510654.1 non-coding upstream 293582 34327262 ~ 34327394 (-)
XLOC_002906 CT573139.2 non-coding upstream 917380 34951060 ~ 34959178 (-)
XLOC_002909 NA non-coding upstream 1020601 35054281 ~ 35058444 (-)
XLOC_002912 BX465844.1 non-coding upstream 1126330 35160010 ~ 35164291 (-)

Expression


Co-expression Network