XLOC_028933


Basic Information

Item Value
gene id XLOC_028933
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 35691795 ~ 35692409 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057378
TCTATCAATAAACTAAGACATGTTTTAGCCTTTATGTGATATATGGCTACGTTCCTATAGccatttctatttatttcctaACCGTGTATTATAGTTCTGCCACTTTTGGCTACGTTCCTATAGCCGTTTCTTGAACTTCTGGCTATGTTCATCTAGCCTTTTTTATGCATGGTGTTCTAGAGTTGAGGTGAGCTGTAATTGTTAGTATTACTACTATGTTTTGTTTACAGGAAAATTGCTTACCAAGTGGATCATGGGACATGGTCTGAAAAGACTGGATATGATTTTCCAGCTTTGCCACGTCAGACAAGAGGGAATGATTGTGGTGTTTTTGTACTCATGTACACCCTCTCAATGGTGTGTGGCATTGGGTTTCAATTCCAGgaggtattattttattatttatgtaacttTATTTGGTTGGTGCTTTTCTTAATCAT

Function

GO:

id name namespace
GO:0010880 regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum biological_process
GO:0014808 release of sequestered calcium ion into cytosol by sarcoplasmic reticulum biological_process
GO:0014809 regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion biological_process
GO:0014819 regulation of skeletal muscle contraction biological_process
GO:0070296 sarcoplasmic reticulum calcium ion transport biological_process
GO:1903514 release of sequestered calcium ion into cytosol by endoplasmic reticulum biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0061061 muscle structure development biological_process
GO:0051924 regulation of calcium ion transport biological_process
GO:0014722 regulation of skeletal muscle contraction by calcium ion signaling biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057378 True 440 lncRNA 0.37 3 35691795 35692409

Neighbor

gene id symbol gene type direction distance location
XLOC_028932 NA coding downstream 198370 35490977 ~ 35493425 (-)
XLOC_028931 BX000703.1 coding downstream 458382 35233297 ~ 35233413 (-)
XLOC_028930 NA coding downstream 608512 35060147 ~ 35083283 (-)
XLOC_028929 NA coding downstream 638445 35052439 ~ 35053350 (-)
XLOC_028928 NA coding downstream 834665 34847760 ~ 34857130 (-)
XLOC_028934 CABZ01087265.1 coding upstream 42597 35735006 ~ 35735169 (-)
XLOC_028935 NA coding upstream 117044 35809453 ~ 35811238 (-)
XLOC_028936 zgc:174653 coding upstream 158680 35851089 ~ 35989745 (-)
XLOC_028937 si:dkey-176f19.4 coding upstream 256404 35948813 ~ 36033454 (-)
XLOC_028938 si:dkey-176f19.1 coding upstream 324354 36016763 ~ 36017577 (-)
XLOC_028941 NA non-coding upstream 802549 36494958 ~ 36496294 (-)
XLOC_028943 NA non-coding upstream 888794 36581203 ~ 36583368 (-)
XLOC_028944 NA non-coding upstream 892910 36585319 ~ 36585639 (-)

Expression


Co-expression Network