XLOC_028935


Basic Information

Item Value
gene id XLOC_028935
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 35809453 ~ 35811238 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058262
gtggcataatttaaaaaatgatatcCTAAATGCTCTACTAAaagaatatataatattttaaattgtaattgttttttttttttgtagagaaTCAGATAGTGGAGATATGCTGTTCTGAAAAATGTAACTACTTTTATCAAATGTATGATAGGCCTTTTTTTTTATATGGATTGTTGGTAACTTTTGTGAAGAGCACAATGATATACAGactagcctatattttattaCCTACtctcatgtcctgaaacacttaAAAGGTTTCCTTTAGTTTAGATATCAGGGTAATATGCATCCATAAAATTTtcctttaaataaagggaaattTACCTAGACCTAATAAATGTCATATAGCCTCTAGGGAAAAGACTTCATATGTTTTACGTCTCTGACGCATTTGGGCTGAATATTTGACCGTGTCTACTAAAACGATGattttataaaacatgttttatacagAGTTATTACAATAGAaattctgtggttttatattttgGGTGGTGTGCTGTGTCATCGACCCTCTGTTAGTTGCGAGACCACTCAATGCATGGTGCAAGCAGTCAGTCCGCAAGTATATAATGAATTAACTTGAAATGCATAGGCCTATTTATATTGACATAACATTTTATGCTGAACAGTAACATGTCATTTGTTTCCTTGGCCCAACCTGGATAGATGAAAGCTCTGGCTTGCACTGACCTGTCAGTGGAAATGTGGCTCTTTAGATTATACAATAGTATGTACTGAATTTATCTAACTGAATATTTgttatcttttgttttttttcaggagGAAGTTGTAGGAAGAACAATCATACAGGCATTTACAGGCAACTTTTTGAGGAAAATCTCCTCTGGAAAAGATGTCGGCAGTCTCTGTGATGACATTTGAGGGAGGGCATAGGGCCTCCCTCGCTGCATTTTCCACTTCAGAAGTTAAAGTAAGCGGTGCTGCCCTGAATTTTACAGATGTTCtgccaaaaaatatgttttggcgGCCATATCTGTGTGAAAGGGTAACATTTTTCAGAAAGTATGTAACCCCCTCCTCGAATTGTGGGGTTTCAGTAGTCATGGTGCAAATGTAGATGGTTTCACCATTACTAAATGCACTGGAGGTTTTGCATATTGAAGATTCCATGACTATTGTCTCTCCCAACCTCTTAAAAGCATTTTGGGGTGGAAAAAGTGAACGAGAAAGGCTGTGGAAAAGCTCCCGCTGGCCAGAACAGCAAAATGAA
>TCONS_00058263
ttagctGTGGTGTAGGTCGAAGAGTTGAGTTTACCCTTCCCGCTCTCCCAgatgtgaactctcatgtgagaGAGCTCAATCTCATCCCCATTGTTAAGCTCCAGTAGGGCAATGTCCCTCCAAAGTGAGACATTGAGTGCATTTTCTCCACACTTCAGACTTAAGTCGAGGATTGGGACTTGTAGGCCCTGCACCTCTGTCATCCTCAGTGCTTGGATCTGCCAAATTTGAGCACAGCAGTGATGGgagGAAGTTGTAGGAAGAACAATCATACAGGCATTTACAGGCAACTTTTTGAGGAAAATCTCCTCTGGAAAAGATGTCGGCAGTCTCTGTGATGACATTTGAGGGAGGGCATAGGGCCTCCCTCGCTGCATTTTCCACTTCAGAAGTTAAAGTAAGCGGTGCTGCCCTGAATTTTACAGATGTTCtgccaaaaaatatgttttggcgGCCATATCTGTGTGAAAGGGTAACATTTTTCAGAAAGTATGTAACCCCCTCCTCGAATTGTGGGGTTTCAGTAGTCATGGTGCAAATGTAGATGGTTTCACCATTACTAAATGCACTGGAGGTTTTGCATATTGAAGATTCCATGACTATTGTCTCTCCCAACCTCTTAAAAGCATTTTGGGGTGGAAAAAGTGAACGAGAAAGGCTGTGGAAAAGCTCCCGCTGGCCAGAACAGCAAAATGAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058262 False 1237 lncRNA 0.36 2 35809453 35810787
TCONS_00058263 True 697 lncRNA 0.45 3 35809453 35811238

Neighbor

gene id symbol gene type direction distance location
XLOC_028934 CABZ01087265.1 coding downstream 74284 35735006 ~ 35735169 (-)
XLOC_028933 NA coding downstream 117044 35691795 ~ 35692409 (-)
XLOC_028932 NA coding downstream 316028 35490977 ~ 35493425 (-)
XLOC_028931 BX000703.1 coding downstream 576040 35233297 ~ 35233413 (-)
XLOC_028930 NA coding downstream 726170 35060147 ~ 35083283 (-)
XLOC_028936 zgc:174653 coding upstream 39851 35851089 ~ 35989745 (-)
XLOC_028937 si:dkey-176f19.4 coding upstream 137575 35948813 ~ 36033454 (-)
XLOC_028938 si:dkey-176f19.1 coding upstream 205525 36016763 ~ 36017577 (-)
XLOC_028939 znf1109 coding upstream 320874 36132112 ~ 36144500 (-)
XLOC_028940 si:dkey-238o14.1 coding upstream 662543 36473781 ~ 36484943 (-)
XLOC_028941 NA non-coding upstream 683720 36494958 ~ 36496294 (-)
XLOC_028943 NA non-coding upstream 769965 36581203 ~ 36583368 (-)
XLOC_028944 NA non-coding upstream 774081 36585319 ~ 36585639 (-)
XLOC_028945 NA non-coding upstream 952902 36764140 ~ 37172305 (-)
XLOC_028950 NA non-coding upstream 1455972 37267210 ~ 37271230 (-)

Expression


Co-expression Network