XLOC_002894 (pimr149)


Basic Information

Item Value
gene id XLOC_002894
gene name pimr149
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34043561 ~ 34046757 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005344
TATAAAGCTTTTTGACGTAGCAGAAACTCTCATTAGCTTCTTTGGATGtctagtagttcagtactttctgcgATTCAACAGTACAGTGATAAAATGGCATTTTCAAAACTGATTAACCGTCTGAAGAAAGCGTTTGGTGTTAAGTGTGCGAACGAACAACCGTGTGAGCCACTCGAACCCACCGGCAGCACGACAGAGAATCACCGTCATCTGATGACCGATGACCCGGCCGTCGCTGCAGGAAAACAGGCAGGGAGACAGAAAAAGAGGAAACTCAAATTGTCTCCCATCTTCTTCGCCTGTTTTTCCAGAAGAAGAGCTACTGTTGTTGATCAGCTATGTGTGCAGGAGATCCACGAACTTCACGCAGAGCCCATCAGTAGCTCTAAATTCTTCTGCACTGCTGTGAGCAACCTGGAGCTGGAAGTTCTCCAACCTCCAGCTCTTGATGCTCCAGCAGACGAAGATTTGGACTTTAAACCTGAAGTGAACAGCTTTGACTCTGCAGTGGTCATTGAGAACGACTCTGCAGAGCTTCACTTCACAGCAGACAACGAATCCTCCCTCAGTGAGGAGTCGGACAGCCTGGAGCAAGAGCTTGAAAGTCCTCCAAGTTCACCATCCGATGAGGACAATGAACTTCCAGTGAGCCAGCAGCTCATAACAGATGACATCTGTGACTCTGCCCTGGATGAAAACTCAAACCCTCCACCGGATCAGGTCTCACAAGAGGACTCTGCTGTGAAGTCTACAGCAGATGatgggacctgcttggacaataATGACATCAGCTGCCGCTACAAACTCGGAAAGCAGCTTGGTGAAGGAGGTTTCGGCTCCGTGTATGAGGGGATTCGCATACAGGATGGTCTGCAGGTGGCAGTTAAATTTGTCCAGAAGACCCCAAATATGCAAGATGTCAGCTCTtcatgtgaccaGCCACTTCCTCTAGAGATCACCTTGACAAACATGGCCAGCGGTGGCTCCAGGTGTTCGAACATTATTCAGCTTCTGGACTGGCAGGTCTTTGAAAACCATTATGTCATGGTGATGGAGCGGCCTAGTCCAAGCATGGACCTGGAGGCATTCCTTGAAGTCAGCGGAGGAGTCCTCAGTGAGAAAACAGCACATACCATCATGAGGCAAGCTGTTTATGCGGCCAACGTGTGCTGTTACCGCGGGGTGTTCCACCGGGACATTAAGCTTCAAAACCTGCTGGTGAACCCCGACACACTGGAAGTCAAGCTGATCGACTTCGGGTGTGGAGACTTCATGATGGAATCAGCCTACAGTATCTTCTCTGGCACAGAAGCGTACATCCCGCCAGAGTTTTATGAAAAAGGATGCTACCGGGCCAAACCAGCGACGGTCTATTCTCTTGGGGTTCTTCTGTTCACAATGCTCCATGGAGAATTCCCATCAGCGTATGACCTGTACTACCTCCAACATGACTGgtccaaatttaccctctctcaagAATGCTGTGATATGATGAGGGCTTGTCTGCATGAGAATCCAGAGTGCAGAATTCCTCTAGAAGAGATGCCTTACCACGACTGGTCCATGCTGGAGTTCTGAGTCACATTAGCagaatgttttgtatatttgatttttgtacatgtctgtaataaagatatattttattgAA

Function

symbol description
pimr149 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation.

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141211-52 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation.

Ensembl:

ensembl_id ENSDARG00000068817

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005344 True 1648 mRNA 0.48 7 34043561 34046757

Neighbor

gene id symbol gene type direction distance location
XLOC_002893 rfc3 coding downstream 9881 34021368 ~ 34033680 (-)
XLOC_002892 zar1l coding downstream 41376 33999869 ~ 34002185 (-)
XLOC_002891 BX569785.1 coding downstream 163197 33876131 ~ 33880364 (-)
XLOC_002890 NA coding downstream 378772 33663165 ~ 33664789 (-)
XLOC_002889 hunk coding downstream 421822 33614377 ~ 33621739 (-)
XLOC_002895 BX548044.8 coding upstream 12250 34059007 ~ 34067286 (-)
XLOC_002896 pimr144 coding upstream 39834 34086591 ~ 34107919 (-)
XLOC_002897 pimr150 coding upstream 73786 34120543 ~ 34150672 (-)
XLOC_002898 pimr145 coding upstream 124917 34171674 ~ 34223567 (-)
XLOC_002899 pimr148 coding upstream 140474 34187231 ~ 34200750 (-)
XLOC_002885 dre-mir-130a non-coding downstream 666347 33377130 ~ 33377214 (-)
XLOC_002884 dre-mir-301a non-coding downstream 666475 33377001 ~ 33377086 (-)
XLOC_002883 dre-mir-454a non-coding downstream 666620 33376818 ~ 33376941 (-)
XLOC_002900 NA non-coding upstream 150025 34196782 ~ 34198566 (-)
XLOC_002902 BX510654.1 non-coding upstream 280505 34327262 ~ 34327394 (-)
XLOC_002906 CT573139.2 non-coding upstream 904303 34951060 ~ 34959178 (-)
XLOC_002909 NA non-coding upstream 1007524 35054281 ~ 35058444 (-)
XLOC_002912 BX465844.1 non-coding upstream 1113253 35160010 ~ 35164291 (-)

Expression


Co-expression Network