XLOC_028940 (si:dkey-238o14.1)


Basic Information

Item Value
gene id XLOC_028940
gene name si:dkey-238o14.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 36473781 ~ 36484943 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00056009
GCTTAATGTAACAGAAAACTCAAGTGACAAATCTGTCCACTGTCTCCTTATTATGAGCACTACatgtattattttcagtgtttgtaagatatatctgtatgtgtttgcctgtaaatgtgtaattacagtagttttatctgttaacagtgttgaatatGAGTCAGCAGATTCAGGAGACGACCCTCACAGGAGcttcacagacaatctccagtcAATCTTCCAGaatcttgagagtaaaatgatcagatttctgaagaatgaattggagaaatttaagaaaatcttacaagaagaaaacagacaagagtttATAAAAGAgtttaatgagaacagaagcattatcacagaagcagctcttgatctcacactcttcttcctgagagagatgaagcaagatcaagctgctgatactctccaggatgagctgttcttcattaatcagcttaaatgtagcctgaagaagaaatatcacagtgtgtttgaaggaattgctcagcaaggagactccacacttttGAATaccatctacacagatctctatatcactcagggtgcgagtgaacaggtcaacactgaacatgagatcagacagattgaagctgcttccagacgtcatcagtcactagagatacaggttgaatgcaaacatttgtttgaagcagctgaacaagacgagcagatcagaactgtcctgacaaaaggagttgctggcatcgggaaatcagtctctgtgcaaaagtttgttctggattgggctgaagggaaagaaaatcaagacatcagcttcatatttcctcttccattcagagagatgaacttaaaggagaaagaacgacaaagtttaaaagacctcataactcagtttttcccagagactaaaggaatgaaccttacaagaagcacacgattcaaagtcctgttcatccttgatggattggatgagtgtcgtcttcctctgaactttgctggtaatgagacgtgtggtgatgtatcttcagcagtctctctggatgttctcctaaCGAAcatcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctgctgactgtatcgaccggctgacagagatacgaggattcaatgatgcccaaaaggaggagtacttcagaaagagactcacagatcagaatcaggccagagaaatcattgatcacattaaacagtcaaagagtctctttattatgtgccacatcccagtcttctgctggatttcagccactgttctccagaacatactgaaactgaaacacagggctcatgctgaaacactgcaggaatctcccaagactctgacacagatgtacacacactttctccgctttcagatccagcagagcagaagaaagtatgatggagaaaacacagcagatgtctcctgggatccaaacctcatcctttcactggggaaactggccttccagcagctggacagaaacaatgtgatcttctatgagagcgatctgacagactgtggcattgacgtctataaggcatcggtgtactcaggcatgtgtacccagatctttaaggaggagacaggaatcattcttggtaccatgtactgctttcttcacttgagcattcaggagttcattgcagccctttatcaacatctgattctaGACAGCGACAAGAAGCATGGATGGTTTTTCATACAGATAAGCAAAAATAAAGGCGTGCTTGATTTGCTGAAGACAGCAGTagacaaggctctggaaagtgagaatggacatttggacctttaccttcgcttctttctcggtctgtcactccagtccaatAGACAACTCTTACGAGGtctgttgacacagcaggatgacagagaccagagcaaagaggaaataattgcctacatcaagcagaaacttgaagggaatctgtctccagagagatccatcaatctgttctactgtctgaatgaactgaacgaccaaactctgctgaaagagattcagtctcacctcagtagtggaagtctgtcatctgctcACCTTTCACCTGCacagtggtctgctctggtctttgtgttgttgacctcagaggaggagctggaggagtttgagcttcagaaattccagagatcagacgagtgtctcatcagactatcagcagtcatcaaaacctcAAAAAGAGCTTTGTAAGTCAAAGTGCTTCATTCTTTCATCTGtgaagtccatctattagcccaatgaggAAACTAACAGCGTGGTCAAAGGTTatatgcatgtaagccttttctagtgcttctgaaaataattttgttatttattagaatttatttatatttgttttttagctctaaatttaatctgactccaattttaagtaACCATCAAATTTAgactacactgttagaccttaccaggctt
>TCONS_00056010
GtcaaagagctcagattgtgtttcTGCTGCACAAGAGcttctgtacttctgcatgtgatggtcagcggctgattgtttcctcaaagctctgctaatgtctgcattggtgttttagctgcagtatggcagaggagcgagtaaaggactctctctcagagaaacacagtgtgagatcaggatcatgtgtgtccagctctgtgtctctgaagagtgaccggtcTAAAGGGAATCCACCAAACTTCAGTgggaaaacaccatcatctgcccaaagtgttgaatatGAGTCAGCAGATTCAGGAGACGACCCTCACAGGAGcttcacagacaatctccagtcAATCTTCCAGaatcttgagagtaaaatgatcagatttctgaagaatgaattggagaaatttaagaaaatcttacaagaagaaaacagacaagagtttATAAAAGAgtttaatgagaacagaagcattatcacagaagcagctcttgatctcacactcttcttcctgagagagatgaagcaagatcaagctgctgatactctccaggatgagctgttcttcattaatcagcttaaatgtagcctgaagaagaaatatcacagtgtgtttgaaggaattgctcagcaaggagactccacacttttGAATaccatctacacagatctctatatcactcagggtgcgagtgaacaggtcaacactgaacatgagatcagacagattgaagctgcttccagacgtcatcagtcactagagatacaggttgaatgcaaacatttgtttgaagcagctgaacaagacgagcagatcagaactgtcctgacaaaaggagttgctggcatcgggaaatcagtctctgtgcaaaagtttgttctggattgggctgaagggaaagaaaatcaagacatcagcttcatatttcctcttccattcagagagatgaacttaaaggagaaagaacgacaaagtttaaaagacctcataactcagtttttcccagagactaaaggaatgaaccttacaagaagcacacgattcaaagtcctgttcatccttgatggattggatgagtgtcgtcttcctctgaactttgctggtaatgagacgtgtggtgatgtatcttcagcagtctctctggatgttctcctaaCGAAcatcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctgctgactgtatcgaccggctgacagagatacgaggattcaatgatgcccaaaaggaggagtacttcagaaagagactcacagatcagaatcaggccagagaaatcattgatcacattaaacagtcaaagagtctctttattatgtgccacatcccagtcttctgctggatttcagccactgttctccagaacatactgaaactgaaacacagggctcatgctgaaacactgcaggaatctcccaagactctgacacagatgtacacacactttctccgctttcagatccagcagagcagaagaaagtatgatggagaaaacacagcagatgtctcctgggatccaaacctcatcctttcactggggaaactggccttccagcagctggacagaaacaatgtgatcttctatgagagcgatctgacagactgtggcattgacgtctataaggcatcggtgtactcaggcatgtgtacccagatctttaaggaggagacaggaatcattcttggtaccatgtactgctttcttcacttgagcattcaggagttcattgcagccctttatcaacatctgattctaGACAGCGACAAGAAGCATGGATGGTTTTTCATACAGATAAGCAAAAATAAAGGCGTGCTTGATTTGCTGAAGACAGCAGTagacaaggctctggaaagtgagaatggacatttggacctttaccttcgcttctttctcggtctgtcactccagtccaatAGACAACTCTTACGAGGtctgttgacacagcaggatgacagagaccagagcaaagaggaaataattgcctacatcaagcagaaacttgaagggaatctgtctccagagagatccatcaatctgttctactgtctgaatgaactgaacgaccaaactctgctgaaagagattcagtctcacctcagtagtggaagtctgtcatctgctcACCTTTCACCTGCacagtggtctgctctggtctttgtgttgttgacctcagaggaggagctggaggagtttgagcttcagaaattccagagatcagacgagtgtctcatcagactatcagcagtcatcaaaacctcAAAAAGAGCTTT

Function

symbol description
si:dkey-238o14.1 Predicted to be involved in intracellular signal transduction.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000100099

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00056009 False 2431 mRNA 0.42 3 36473781 36476889
TCONS_00056010 True 2323 mRNA 0.44 6 36474013 36484943

Neighbor

gene id symbol gene type direction distance location
XLOC_028939 znf1109 coding downstream 329281 36132112 ~ 36144500 (-)
XLOC_028937 si:dkey-176f19.4 coding downstream 440327 35948813 ~ 36033454 (-)
XLOC_028938 si:dkey-176f19.1 coding downstream 456204 36016763 ~ 36017577 (-)
XLOC_028936 zgc:174653 coding downstream 484036 35851089 ~ 35989745 (-)
XLOC_028935 NA coding downstream 662543 35809453 ~ 35811238 (-)
XLOC_028941 NA coding upstream 10015 36494958 ~ 36496294 (-)
XLOC_028942 BX649453.1 coding upstream 21496 36506439 ~ 36522557 (-)
XLOC_028943 NA coding upstream 96260 36581203 ~ 36583368 (-)
XLOC_028944 NA coding upstream 100376 36585319 ~ 36585639 (-)
XLOC_028945 NA coding upstream 279197 36764140 ~ 37172305 (-)
XLOC_028934 CABZ01087265.1 non-coding downstream 738612 35735006 ~ 35735169 (-)
XLOC_028933 NA non-coding downstream 781372 35691795 ~ 35692409 (-)
XLOC_028932 NA non-coding downstream 980356 35490977 ~ 35493425 (-)
XLOC_028931 BX000703.1 non-coding downstream 1240368 35233297 ~ 35233413 (-)
XLOC_028950 NA non-coding upstream 782267 37267210 ~ 37271230 (-)

Expression


Co-expression Network