G1009990


Basic Information

Item Value
gene id G1009990
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 68443649 ~ 68447274 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1148880
GGAAAAAATAAATCTACAAAATTCTCATGAtaaacagtgccttcaggaaaagtagtcagaccccttgactttttccacattttgttacattacagccttaattctaaaattgattaaattgttgttgtttttctaatCAACGTACACACaaaccccatgatgacaaagaaaaaacagtttGCCATTTTTCTAATTAATtagaaataaaaaactgaaatatcatatttacatatgttttagaccctttactcagtactttgttgaagcacccttggcagcggttacagcatcgagtcttcttgggtatgatgctacaggcttggcacacctgtatttggggagtttctccattcttctctgcagatcctctgaagctctgtcaggtttgatggggagcgttgctgcacagctattttcaggtctctccagagatgctcaattgggttcaagtccgggctctggctggaacacttaaggacattcaaagacctgttctgaagccactcctgcattgtcttgaccgtgtgcttagggtcattgtcctgttggaaggtgaactgtcGCCCCAGTcggagatcctgagcgctctggagcaggttttcatcgaggatctcatctttgccttgatcctgactagtctcccagtccctgtcgctgaaaaacattaagctgccactaccatgcttcactgtagggatggtgccaggtgtcctccagacgtgacacttggaattcaggccaaagagttcaatctttgtttcatcagaccagagaatcttgtttctcctggtctgagattctttaggtgccttttggcaaactccaagcaggccttttactgaggagtggcttccatctggccattctaccataaaggcctaattggtggagtgctgcagagatgggagaaccttctagaaggacaaccatctccacaggggaactctagagctctgtcagagtgaccatcgggttcttggtcacctccctgacgaagaaccttctcccccgaatgctcagtttggctgggtggtcagctctaggaagagtcttggtggttccaaacatcttccatttaagaatcatggaggccactgtgttcttgggtaccttcaatgctgcagatagtgttggtacccttcgccagatctgtgcctcgacaaaatcctgtcttggagctctacagacaatcccttcgacctcgtggcatgggttttgctttgacatgcactgtcaactgtggggccttagacaggtggactccaatcaagttgtagaaacatctcagggatgatcaacggaaacaggatgcacctgagcttaattttgaCTCTCATAGccaaggttctgaatacttatgtaaataaggtatttctgtattatAAAAACCTacttttgatttgtcattatggggtattgtgattag
>TU1148874
AGTGTATTTCCTTTAGTATCCTAGTATCAAAATCACCAGAGACATCAATCATTGTCACTATGATAATTATCATATTAAACAATACTTTTATCAAGACATTTGGAGATTCAACCTGACTAAAGATTTACAGTAGTAATAGTTATCACTGCTAAGATCTCTCTTTGAATTGTAGGATGCTACACAGATCTACTGAAAATGCAATGCACCGGCCCCTACATGACTTTGTAGAAAGTTAAATAAGACAGACAATATGAGATCGTTGAGCGTCCCCCTCATCCCAAAATACAATCACTTCCCAACATGAGGCGTCAGAGCAATCAGAGCTCCATCAATCAATCATCAAAACTCAAATCAGCTTCCCCAACACAGAGCAGAGCGCAGAGAGCAGAGAACCAAGCAACGGCTgagtcccaaatcacaccctttTCCCcatagggcactggtcaaaagtaatgcacaatatagggaatgttgtgctatttgggatgcatatAATCTCTCTGGATAAAGTGGCAGCAGAATCAATGTGGGATAAACTCATCAATTAAAAATAGGATGTAAGTTCATGGATATGTCTTGTTTTGTTATTGGTGATGACAGAAGGTTTCATTTTGTATTAATAGAACTTGTGAGGCGTTGAAGACGGACGTCTTGATTTGTGTAATTATATTTCTCCTTAGAGAAATGGAAATGGCTGTTTCATTGGCCAGGATGAGAAGTCAAACCACGATGAGCAGTCAGTGCACGCGTTGCTTGGTCTGGCTCCAGCATAATACATTACACTGACTGCATTccctactggtcaaaagtagtgcactaaatagggaatagtttgccatttgggacacaggcactAGCTCTCATCCGAAAAAGACAAAACTTCTCATTCATGTCTCTTTTGTTGCAACTGTAAAATTCTAATATCTATCCATGCCTGACATCTTAACTACCATCACAAATCACTTGTAGTGCGCCAACTCACAAAGGAGATTGCGATAGCCTTCATACAGTAAAGTACTCTTCTTAGCTTTCCTGGAGTCCATATACCATTTGGGTCACATCCCACATATTATATATAAACCATATCTTAAAGCATAACCATACATCAATGATTCATTAAAAGGGATTTCATTTACTGTATTTCACTGTTCTCAATTCATTCATTGTACTCAATTAACTGTATTTCCATTTCCCATTACAATCCTATTTGTGTTAAAACAGAGGCATCAAATATTTCCCATTGGAAGTCTTTTGATACAGTTACAATTAATGTATTGGTCATTCTTAAACCTAATCTGTCCCTGGGTCTGCCTTAAAGACAGGTACCAGTGAAGActctgaggagaggaggaaggggaaggcCAGCTGAGCAAGATACACACATGCTCATCTACTATAGCACTGTACCGCACATATCAAATGTGTGTAAGGTAAAGCTACGCTGTATATGTCactgcctcactctctctctctctctctctctctgtaactctctctctacttcaataTCAAAGTGAGTAATGTTGGAGATTGCTGTGCCTTAGGGACAGTGTCCAGTTGGGACCAAAACAATGCAAAACACATTTTCTAATAACAGTATAGGAAATATTAAAACGTCTATTGCTACAGGATATAGGGGTTGTATCCTTggtgtgtcacacaacacacatGAACAGTTTTGTAAAGGTACACATCAAACAGAGAAGTGAGTAGATATACAATACCCCATGTTAAAACGACTTCACTAGTGAGTAAAATACATGGTGTGCATCCCTCATTCTAGGAAGGTGAACAGAGAGTTATTAGAAGTGTACACTATGTACCATCATTAATGAATACAAGCAAAAGTGGTTAAGGAATATAAAGAAAAGggcctctctcttttctctctctccgtattCAGCATGTCCACACGGATCCACAGCTCAGTGCCACAACCCGCTATGTTTctgagaaacacacactcacacgttagcatgcatgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1148880 False 1426 lncRNA 0.45 1 68443649 68445074
TU1148874 True 2051 lncRNA 0.40 1 68445224 68447274

Neighbor

gene id symbol gene type direction distance location
LOC110535098 LOC106580534 coding upstream 30436 68364480 ~ 68413213 (+)
LOC110536289 LOC106580533 coding upstream 82445 68287058 ~ 68361204 (+)
LOC118937378 NA coding upstream 341849 68099125 ~ 68101800 (+)
LOC110536285 LOC106580528 coding upstream 370550 68064148 ~ 68073099 (+)
LOC110536283 LOC106580527 coding upstream 395685 68041053 ~ 68047964 (+)
LOC110536291 LOC106580540 coding downstream 137353 68584627 ~ 68587134 (+)
LOC110536292 LOC106580550 coding downstream 143435 68590709 ~ 68611500 (+)
LOC118937485 NA coding downstream 214476 68661750 ~ 68661802 (+)
LOC110535101 LOC106580561 coding downstream 239947 68687221 ~ 68847333 (+)
LOC118937380 NA coding downstream 473592 68918586 ~ 68924491 (+)
G1009983 NA non-coding upstream 10730 68432602 ~ 68432919 (+)
G1009973 NA non-coding upstream 23882 68419563 ~ 68419767 (+)
G1009970 NA non-coding upstream 26832 68416606 ~ 68416817 (+)
G1009936 NA non-coding upstream 81349 68362021 ~ 68362300 (+)
G1009280 NA non-coding upstream 255859 68187562 ~ 68187790 (+)
G1009991 NA non-coding downstream 3957 68451231 ~ 68451543 (+)
G1009999 NA non-coding downstream 13221 68460495 ~ 68460703 (+)
G1010000 NA non-coding downstream 14593 68461867 ~ 68462075 (+)
G1010001 NA non-coding downstream 14892 68462166 ~ 68462365 (+)
G1010002 NA non-coding downstream 16253 68463527 ~ 68463794 (+)
G1008017 NA other upstream 1561398 66881799 ~ 66882251 (+)
LOC110536267 LOC106580513 other upstream 1645432 66774135 ~ 66798230 (+)
G1007556 NA other upstream 2030714 66412574 ~ 66412935 (+)
G1007088 NA other upstream 2426076 66009581 ~ 66017573 (+)
G1007008 NA other upstream 2544281 65898748 ~ 65899368 (+)
LOC110536300 LOC106580593 other downstream 951444 69398535 ~ 69400234 (+)
G1011336 NA other downstream 1186227 69633501 ~ 69633876 (+)
sb:cb288 NA other downstream 1258160 69705334 ~ 69711411 (+)

Expression


Co-expression Network