G1010085 (LOC106580537)


Basic Information

Item Value
gene id G1010085
gene name LOC106580537
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 68483112 ~ 68483525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1148980
ctcctcagcaGAGCCTCGTCTGTCTCTGCCTTGGTCTTGGCTGTACATCCTCTCTAGCttcttcctctgttttcctcCGTCTCGCGGGGACGTCTCCAGATCCAGGGAGCGCTGGCTCGGACATGGGGCCCTGATGCAGGTGACACAGTCTGGGGTGCAGTCCTCCCGCGAGCCCCCCCTCCTCACCACCCAGTCCCGGATGTTATGGGCACTCCCTGAGCTCTGCAGGGGCTGGGACTTGGGCCTGTGGCCCTGTGGGCCATGACTAATGTTGCCGCGGTGATGTTTGCTGCCTGGTGGTTGTTGGTTGGAAAAGGAGGTCTGGTTggcggagggaggaggggacagaggctGCTTCAGCACCTCCAGCTCCAGATTCTCCTCGCTGCCTCGCCCCCCTAGCATGCCTCCCTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1148980 True 414 lncRNA 0.63 1 68483112 68483525

Neighbor

gene id symbol gene type direction distance location
LOC110535098 LOC106580534 coding upstream 69899 68364480 ~ 68413213 (+)
LOC110536289 LOC106580533 coding upstream 121908 68287058 ~ 68361204 (+)
LOC118937378 NA coding upstream 381312 68099125 ~ 68101800 (+)
LOC110536285 LOC106580528 coding upstream 410013 68064148 ~ 68073099 (+)
LOC110536283 LOC106580527 coding upstream 435148 68041053 ~ 68047964 (+)
LOC110536291 LOC106580540 coding downstream 101102 68584627 ~ 68587134 (+)
LOC110536292 LOC106580550 coding downstream 107184 68590709 ~ 68611500 (+)
LOC118937485 NA coding downstream 178225 68661750 ~ 68661802 (+)
LOC110535101 LOC106580561 coding downstream 203696 68687221 ~ 68847333 (+)
LOC118937380 NA coding downstream 437341 68918586 ~ 68924491 (+)
G1010084 NA non-coding upstream 2277 68480527 ~ 68480835 (+)
G1010010 NA non-coding upstream 9696 68473187 ~ 68473416 (+)
G1010008 NA non-coding upstream 12888 68470012 ~ 68470224 (+)
G1010002 NA non-coding upstream 19318 68463527 ~ 68463794 (+)
G1010001 NA non-coding upstream 20747 68462166 ~ 68462365 (+)
G1010119 NA non-coding downstream 38575 68522100 ~ 68522347 (+)
G1010125 NA non-coding downstream 43662 68527187 ~ 68527440 (+)
G1010129 NA non-coding downstream 47764 68531289 ~ 68531540 (+)
G1010133 NA non-coding downstream 52354 68535879 ~ 68536161 (+)
G1010146 NA non-coding downstream 69574 68553099 ~ 68553333 (+)
G1008017 NA other upstream 1600861 66881799 ~ 66882251 (+)
LOC110536267 LOC106580513 other upstream 1684895 66774135 ~ 66798230 (+)
G1007556 NA other upstream 2070177 66412574 ~ 66412935 (+)
G1007088 NA other upstream 2465539 66009581 ~ 66017573 (+)
G1007008 NA other upstream 2583744 65898748 ~ 65899368 (+)
LOC110536300 LOC106580593 other downstream 915193 69398535 ~ 69400234 (+)
G1011336 NA other downstream 1149976 69633501 ~ 69633876 (+)
sb:cb288 NA other downstream 1221909 69705334 ~ 69711411 (+)

Expression


Co-expression Network