XLOC_028943


Basic Information

Item Value
gene id XLOC_028943
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 36581203 ~ 36583368 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057379
ATCCTTCCACAGCAGGATGTTTTTCCTCTGCCCTGTGTGCAAAAAGGCTCCTCATTCTCTTCCTGGGCATCTCAGGAAGGTGTGTATGAGGAACAGCACAGAAGCAGAGATCCAGGCTGTCGTCAAAGAGGCCAAGAAGGAGTTGTCTGAATTCTGTCACAAAGGACGTTTCTGGGAATTTGGAAAAATTTGTGACATATTGGACTCTACTAATCCTCTGGCCAGGTTTGTATTCAGTTGTGCTTATCATATTTGATGTATCTGACTTCAAATCTAACATCagcatataataataaacatacatttttggtATTGTTTATTTGACCTTATTTTATGTTCCTTGTTTTAGGATGAGAAAAGATGCAGTCAAAGAGGTTGGTGATTAATAACTTACCTTCAGTCCTCCCGGAACCAGCTCGGTCGACAACATCTTCTGTGCCTCAAAGCTCTGGAGAAGGTGCAGAAAGTTCATTGGAGCCTCCAAATGAGTCCTTATCCGACGAGAGCTCTGGAGAGTACTATAAGAGGTATACTTTTATATCAGCATTCCCAGAAAGTAAATATACACTGCGGATATGACTTCTCTTTAATATACAAAGTCATTTTGATCACCTGCTTTTCTATTTCAGCACTGGTGGACCAATGTGGACCTCTTCCGTGAGGGTGGAGATGGTCAAAAAAGGCTTATTCAATAAGCACTCCATTGACCACCCCCTTCTAGCAGAATTTAATAAGTACCTTTACATTGATCTAGGacataaaaacagcaaacaaGTAGTAAGTTCAAGTGaaattatatatgtaaaaatgagtgaatgggtgttgttttatgcagtacagtttattttaatgtgaAATGTGTGCTTTCAGGTGGAAACAGTGTCCAGGTTCTTGCATTACATGGACCCCACTGAGCCAAACTTGATGTTTGTTCGGCAGGTGGAGAAAGTGCGAGAGTACTTTAACATCTTGTCAGATACAAAGCTTTCAAAATGGACAGTATTCAACTACTCGAAGAGTCTCAAGAGGTTCATGAAATACATTATTACCTCCACGGACATTTGCCACAACAATCCAGCTTTGTTCCAGGACTGTGAGAGTTTTATGGATGTGCTGTATGGAATACAGAGTGGCATGTCCAAAGAAGTGAGCATGGAGGTCACAGCAAAAAAATCAGAGTTTGGTTGTGGCAAAGAAGTTTTGCCAAAGGACTGCCTTGCTGTTTTGGAGGCTGCATTCAAAGATTTCCAGGCCGTGATATGCAAAATGCAGGGTCCAGGAGCCATCACAGGGGACTGTTTGACTAAAAATGAACGGCTGCTCGTCCTGTACTACCTGGAGGCTGTTATCATGCTGAAGCTAGTCCAGCGGCCTGGAATTGTGACACACATGACtGTTGAGGATTGGGAGGGGAGAAGCCGGATAGAGAATGGTGTCTGTGTTGCAGTGAAGGAGCACAAAGTACCATTGTCACACGAACAGGAACTTTGGTTCGACTTGTACTTCAATGAGGTGCGGCCAGTAATGCTGCAAGAAAACCACACCGGCGATGATGTGGCAGTTGATTCATTTTTTGTGTCAAGTAGTGGGAGATCGATTTATAATCCCTCCAACGACTTAAAAAGACTACATGACAAATACAGTCTTCCCAGTGTGACGTGTGGCGATGCCCAGAGAGCATTTGAGGCAGCAGCACAAAACCTGTCAGAAGTGGAGAGAAATGTGGTGGCAGCTGAAAGAATCTACATGAGGGGAACATCTTCAGATCCGTTTCTGGCTCTAAGTGTGCTAGATCAGCTTGCTGGGAAAACACTGTAA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0008152 metabolic process biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057379 True 1818 lncRNA 0.43 5 36581203 36583368

Neighbor

gene id symbol gene type direction distance location
XLOC_028942 BX649453.1 coding downstream 58646 36506439 ~ 36522557 (-)
XLOC_028941 NA coding downstream 84909 36494958 ~ 36496294 (-)
XLOC_028940 si:dkey-238o14.1 coding downstream 96260 36473781 ~ 36484943 (-)
XLOC_028939 znf1109 coding downstream 436703 36132112 ~ 36144500 (-)
XLOC_028937 si:dkey-176f19.4 coding downstream 547749 35948813 ~ 36033454 (-)
XLOC_028944 NA coding upstream 1951 36585319 ~ 36585639 (-)
XLOC_028945 NA coding upstream 180772 36764140 ~ 37172305 (-)
XLOC_028946 si:dkeyp-87d1.1 coding upstream 205769 36789137 ~ 36791395 (-)
XLOC_028947 si:dkeyp-87d1.1 coding upstream 208364 36791732 ~ 36792144 (-)
XLOC_028948 si:dkeyp-87d1.1 coding upstream 208906 36792274 ~ 36793658 (-)
XLOC_028935 NA non-coding downstream 769965 35809453 ~ 35811238 (-)
XLOC_028934 CABZ01087265.1 non-coding downstream 846034 35735006 ~ 35735169 (-)
XLOC_028933 NA non-coding downstream 888794 35691795 ~ 35692409 (-)
XLOC_028932 NA non-coding downstream 1087778 35490977 ~ 35493425 (-)
XLOC_028950 NA non-coding upstream 683842 37267210 ~ 37271230 (-)
XLOC_028951 NA non-coding upstream 688650 37272018 ~ 37273043 (-)
XLOC_028952 NA non-coding upstream 745159 37328527 ~ 37333793 (-)

Expression


Co-expression Network