G1010443


Basic Information

Item Value
gene id G1010443
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 68687257 ~ 68687962 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1149378
CCTCGGATATTTGCTGCAAGGCGAAAGCTGCATCGCAGTAACTTGGCCGCTGCAAATACTCCAAATCAGGCGCTGTTGAGAGATAGTTCCCCCTGTTCCTCCGCGTTATCCTCGGCCGATCGGGGTCCCTGTTTTCCTGCTCAGAGGAGGCATTAGCTGCCGAGGCCATGTTGCGGAGACTTCGCGCTGGTTCTGCTTTTCCACGTTATAATATTTCCCCGAAAGCGTGTGGTAATGTCCCAAGGCAACACAGTTTCACTCTCGGTGATCTCACACCCGTAAAGTACTTCATACTGCTGTTGGAGACGGCGAGTCAAAGTCTGCGCCTTCCATCCCAACATTTCGTGATCCAGAGGTCTCCACCGCTTTGCACATTCAGCGTTTCTCTTAAAAAACGGTATTTATCTTATACGACAAAGTGGAAAAAGCCATTCCCATCTACAAAACGGCGGCTTGGAACGTTCGATGGTCGTAGCattctgtgtgttctatgtggTCTTCCCTTGGGCCGCGACACCGCGAACTCTGAGATTCAACAGAGGAGAAAAAAGACCTCTCTCCATTTggaaacagaggaggaggggtaaaAGCGAAAATAATCGAAATCCCGCCTTTAGGGCTGTCAGATGGCCGGATTTTCTCACATCTGATTGGTTCCAGAAGGGCAAAAATTACTCAGCAAACACGACTATTATTAGCTGCTTAG
>TU1149379
CCTCGGATATTTGCTGCAAGGCGAAAGCTGCATCGCAGTAACTTGGCCGCTGCAAATACTCCAAATCAGGCGCTGTTGAGAGATAGTTCCCCCTGTTCCTCCGCGTTATCCTCGGCCGATCGGGGTCCCTGTTTTCCTGCTCAGAGGAGGCATTAGCTGCCGAGGCCATGTTGCGGAGACTTCGCGCTGGTTCTGCTTTTCCACGTTATAATATTTCCCCGAAAGCGTGTGGTAATGTCCCAAGGCAACACAGTTTCACTCTCGGTGATCTCACACCCGTAAAGTACTTCATACTGCTGTTGGAGACGGCGAGTCAAAGTCTGCGCCTTCCATCCCAACATTTCGTGATCCAGAGGTCTCCACCGCTTTGCACATTCAGCGTTTCTCTTAAAAAACGGTATTTATCTTATACGACAAAGTGGAAAAAGCCATTCCCATCTACAAAACGGCGGCTTGGAACGTTCGATGGTCGTAGCattctgtg
>TU1149380
CCGCTGCAAATACTCCAAATCAGGCGCTGTTGAGAGATAGTTCCCCCTGTTCCTCCGCGTTATCCTCGGCCGATCGGGGTCCCTGTTTTCCTGCTCAGAGGAGGCATTAGCTGCCGAGGCCATGTTGCGGAGACTTCGCGCTGGTTCTGCTTTTCCACGTTATAATATTTCCCCGAAAGCGTGTGGTAATGTCCCAAGGCAACACAGTTTCACTCTCGGTGATCTCACACCCGTAAAGTACTTCATACTGCTGTTGGAGACGGCGAGTCAAAGTCTGCGCCTTCCATCCCAACATTTCGTGATCCAGAGGTCTCCACCGCTTTGCACATTCAGCGTTTCTCTTAAAAAACGGTATTTATCTTATACGACAAAGTGGAAAAAGCCATTCCCATCTACAAAACGGCGGCTTGGAACGTTCGATGGTCGTAGCattctgtg

Function

NR:

description
protein patched homolog 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1149378 False 706 TUCP 0.49 1 68687257 68687962
TU1149379 False 484 lncRNA 0.51 1 68687479 68687962
TU1149380 True 438 lncRNA 0.50 1 68687479 68687916

Neighbor

gene id symbol gene type direction distance location
LOC110535100 LOC106580549 coding downstream 101986 68554386 ~ 68585493 (-)
LOC110536290 ccdc183 coding downstream 134565 68536798 ~ 68552914 (-)
LOC110535099 LOC106580537 coding downstream 182240 68445137 ~ 68505239 (-)
LOC110536288 rabl6 coding downstream 562608 68110512 ~ 68124871 (-)
imp4 LOC106580531 coding downstream 588674 68095565 ~ 68098805 (-)
LOC110536294 cssa24h9orf3 coding upstream 245991 68933953 ~ 68991741 (-)
LOC110535102 LOC106580556 coding upstream 416142 69104104 ~ 69187259 (-)
LOC110536298 tmem252 coding upstream 580338 69268300 ~ 69270450 (-)
LOC110536299 zswim6 coding upstream 618986 69306948 ~ 69395042 (-)
LOC110536301 NA coding upstream 712588 69400550 ~ 69404206 (-)
G1010336 NA non-coding downstream 989 68686238 ~ 68686490 (-)
G1010299 NA non-coding downstream 27987 68659231 ~ 68659492 (-)
G1010295 NA non-coding downstream 30392 68656530 ~ 68657087 (-)
G1010288 NA non-coding downstream 37813 68649434 ~ 68649666 (-)
G1010266 NA non-coding downstream 68714 68618390 ~ 68618765 (-)
G1010445 NA non-coding upstream 3212 68691174 ~ 68691401 (-)
G1010446 NA non-coding upstream 3740 68691702 ~ 68692141 (-)
G1010447 NA non-coding upstream 5256 68693218 ~ 68693421 (-)
G1010449 NA non-coding upstream 8247 68696209 ~ 68696490 (-)
G1010472 NA non-coding upstream 46875 68734837 ~ 68735085 (-)
G1009720 NA other downstream 716151 67971071 ~ 67971328 (-)
G1007506 NA other downstream 2314530 66372642 ~ 66372949 (-)
G1006106 NA other downstream 3587923 65098960 ~ 65099556 (-)
G1005628 LOC106580457 other downstream 4323702 64360764 ~ 64363777 (-)
G1004487 NA other downstream 4885477 63801529 ~ 63802002 (-)
G1010922 NA other upstream 428545 69116507 ~ 69119486 (-)
G1011014 NA other upstream 617374 69305336 ~ 69306428 (-)
G1012814 NA other upstream 2196514 70884476 ~ 70890991 (-)
G1013669 NA other upstream 2809346 71497308 ~ 71515434 (-)
G1013960 NA other upstream 3308119 71996081 ~ 71996688 (-)

Expression


Co-expression Network