XLOC_028945


Basic Information

Item Value
gene id XLOC_028945
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 36764140 ~ 37172305 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057380
tttattttaaacaggataaagtgtccagaCACAGAGAacaactcctgctgaagcgactgatctccacactgttataaagatggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatttgcaggaacaaacagacctaattgaagagaatgaggagagtaaagaggaggaacatcatgtcaaaattgaggaaaaaactattttacagactgatggtgttttgaaaaggagagacaagaatcatttcacctgcactcagtgtggaaggagttttggaagaaaacacaatcttaagattcacatgaggatccacactggagagaaaccatacacatgcaatcagtgtgggaagagtttcaaccaatcatcaaacctttataatcacatgatgatccacactggagagaaaccattcaaatgcactcaatgtgggaaaagttttaaccgCTCATCAGACCTTCATCAacatatgaggattcacactggagagaaaccatacacatgcactcagtgtgggaagagtttttactgctcatcacaccttcatcaacacatgaggatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagccaatcatcaaactttaagcaacacatgaggatccacagtgaagagaaaccattcgcatgcactcagtgtggaaagagtttcaaccaataatcaaaccttaatcgacacatgaggatccacactggaaagaaaccattcatgtctaatcttcttgtttaatcccgccccttttcgcagtggcgtacaacagaattttgcatactcaatagtgatgggaagcataagagatgagttatttaataaatcaaatagtcTTTGTTAATAGTTTTGTAACATATGATGCTGCCAGCATTAGACACTTAAACActgtttaattgttgtttattgttttataaacatTGACTTGAGACTTGAGAATAGaacagtgcatttaaaaaaaaataaaattaaataagctttaaaacaacattgtgtggctttacttgttggacttggcttaaggtttgtgagcatttaaaaacacaatctcTGAACTTTTGGTAGGCTGAGTCTGTTTCTTCTTTTGTCATTAGTTGTTGTCGCAGGATAAAagatgctaaatgagtaaatgcaaatgcaaactatctttatacaaatattagaccaatacataaagtctgcatagaaaaacattatCAAACAAAAATGGGGTATAAAAgaacaaattacaaatcacttgtaattgtagaatttaattaatctatcccctagcttagtgtttgttttctgatagcaagccagcaaatagacaaatcaatatatatactagatataaaccacatatccagtagaaaaaagtaacaataacttaaaatagaaataaaaagaaaataggacAGAACTTCTTTTATTTGTTAGAAAATGCTATTTAAGTTcacattgtttgatgattttatgaaaagtttaaaatatgatcatatgctgcaacaaaaattcagttttacataaatattattgactgaggtTCTCGTTGCAGTGTACAGGAGAACTACAGTTTAAGAATAGATATGCACATAATAGTGTAAGGATGGCCatatctctccataatattaaaatctgcaaACTGTTATGGAACTTCACGCGAGACAAGACCATGAGAATGGTCagtcactaaaacaataaactttctaatgtgagaagaagatcagctagaaaagcagttgttcaggttgtctcgatcatgcatcctgagcccccctctttgccctggactttaccttctccaccagagcagctcactcacattccACACATAATGTTAAAATtcttaatatggtgtatcttgtggctttatattcatgtttggtgtgattttaaatgtctctgtgtgattggtaaagtggtcttaatttcactgtaatattttacaatctcctttatatcagttaacttgggttttgactttgataagatctttgccagatgctccactccaggcaaaatggtcttcgcatcaactcatgaccaggcaagagtcttggtgaagcttttattgtcttgaatttatgatgatttgagtatttaggcaAAGGGTGCAGAAGTGTCCGTGGGATCCTGTAGACAGGATACCCCATTGCAGGTTGTGAGTCTCAGAGCTCTGCATCAGGATTTATATGCTGCAATGAATTTCTACATGGTCAGGTATTCCTCTTTAACTCTTAAAtgtatctttgagtaattgatgttgtacaatcttgattggcttattttgtttaattatgtgaactgcaatggaaaatcttttcctgacaaataaatgtaaaattcttgtttaa
>TCONS_00056012
catcaagctaggctttttaataaataaaaacaagtaagctttaaattaaataacacgtTTGTGCCATTAAAGCTTTATATCAAATGTGACAACTCTTCCCAGTAGATGTTTTTATAAAACAGCAATTTAAGTGaaagatattataaataaaaaacaaaagccacaGAGCATAATGAGCTTAACAACTTGACTTGAGAATACAAcagtgcattttttaaaaaataaaataaaattaaataagctttaaaacaatactgtgtggctttacttgttggacttggcttaaggtttgttAGCATTTAATAACACAAGCTCTGAACCTTTAATAGGCTGAGTCTGTTTCTTCTTGTGTCATTAGTTGTTGGTCGCAGGATAAAagatgctaaatgagtaaatgcaaatgcaaactttatacaaatattagaccaatatataaagtctgcatagaaaaacattatCAAACAAAAATGGGGTATAAAAgaacaaattacaaatcacttgtaattgtagaatttaattaatctatcccctagcttagtgtttgttttctgatagcaagccagcaaatagacaaatcaatatatatactagatataaaccacatatccagtagaaaaaagtaacaataacttaaaatagaaataaaaagaaaataggacAGAACTTCTTTTATTTGTTAGAAAATGCTATTTAAGTTcacattgtttgatgattttatgaaaagtttaaaatatgatcatatgctgcaacaaaaattcagttttacataaatattattgactgaggtTCTCGTTGCAGTGTACAGGAGAACTACAGTTTAAGAATAGATATGCACATAATAGTGTAAGGATGGCCatatctctccataatattaaaatctgcaaACTGTTATGGAACTTCACGCGAGACAAGACCATGAGAATGGTCagtcactaaaacaataaactttctaatgtgagaagaagatcagctagaaaagcagttgttcaggttgtctcgatcatgcatcctgagcccccctctttgccctggactttaccttctccaccagagcagctcactcacattccACACATAATGTTAAAATtcttaatatggtgtatcttgtggctttatattcatgtttggtgtgattttaaatgtctctgtgtgattggtaaagtggtcttaatttcactgtaatattttacaatctcctttatatcagttaacttgggttttgactttgataagatctttgccagatgctccactccaggcaaaatggtcttcgcatcaactcatgaccaggcaagagtcttggtgaagcttttattgtcttgaatttatgatgatttgagtatttaggcaAAGGGTGCAGAAGTGTCCGTGGGATCCTGTAGACAGGATACCCCATTGCAGGTTGTGAGTCTCAGAGCTCTGCATCAGGATTTATATGCTGCAATGAATTTCTACATGGTCAGGTATTCCTCTTTAACTCTTAAAtgtatctttgagtaattgatgttgtacaatcttgattggcttattttgtttaattatgtgaactgcaatgg

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000103473

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057380 False 2397 lncRNA 0.35 2 36764140 36770657
TCONS_00056012 True 1556 lncRNA 0.33 2 36764181 37172305

Neighbor

gene id symbol gene type direction distance location
XLOC_028944 NA coding downstream 178501 36585319 ~ 36585639 (-)
XLOC_028943 NA coding downstream 180772 36581203 ~ 36583368 (-)
XLOC_028942 BX649453.1 coding downstream 241583 36506439 ~ 36522557 (-)
XLOC_028941 NA coding downstream 267846 36494958 ~ 36496294 (-)
XLOC_028940 si:dkey-238o14.1 coding downstream 279197 36473781 ~ 36484943 (-)
XLOC_028949 si:dkey-3p4.7 coding upstream 58282 37230587 ~ 37236494 (-)
XLOC_028950 NA coding upstream 94905 37267210 ~ 37271230 (-)
XLOC_028951 NA coding upstream 99713 37272018 ~ 37273043 (-)
XLOC_028952 NA coding upstream 156222 37328527 ~ 37333793 (-)
XLOC_028953 NA coding upstream 206832 37379137 ~ 37380416 (-)
XLOC_028935 NA non-coding downstream 952902 35809453 ~ 35811238 (-)
XLOC_028934 CABZ01087265.1 non-coding downstream 1028971 35735006 ~ 35735169 (-)
XLOC_028956 NA non-coding upstream 434104 37606409 ~ 37607499 (-)

Expression


Co-expression Network