XLOC_028949 (si:dkey-3p4.7)


Basic Information

Item Value
gene id XLOC_028949
gene name si:dkey-3p4.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 37230587 ~ 37236494 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00056018
attttggcgtggcgtgtgacgtcataaggctgcgccgctcctGCGCTGcattcagctggagaaaggataaagtgtctaaacagaaaaactcctgctgaaacgactgatctccacactggtataaagatggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaagaagatctgcaggaacaaacagacctaattaaagactATGAGAAGAtcaaagaggaggaacatcatctCAAAATTGAGGACAGAAATCATTTagagactgatggcattttaaaagtgagagacaagagttgttttacctgcactcagtgtggaaagagtttggcaagtaaaagcaaacttaagattcacatgaggatccacactggagaaaaaccattcacatgcactcagtgtgggaagagtttcagttactcatcacaccttaatgaacacatgatgatccacactggaaagaaaccattcacatgcactcagtgtgggaagagtttgacAACCAAACGCAAACTTAAAATTCACACGAtgaaccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagccgctcatcatcccttaataatcacatgaagatccacactggagagaaaccatttgcatgcactcagtgtgggaagagtttcagccactcatcacaccttaataaacacatgaggattcacactggagagaaaccattcacatgcactttgtgtgggaagagtttcagccaatcatcacaccttaatgaacacatgaggatccacacgggagtgagaccattcacatgcactcagtgtgggaagagtttcagccaatcatcatacattactaaacacatgaggatccacacgggagtgagaccattcacatgcactctgtgtgggaagagtttcagccagtcATCtacccttaatctacacatgaagatccacactggagagaaaccattcacttgcactcagtgtggcaagagtttcagccaattatcacaccttaatcaacacatgatgatccacactggagagagaccatacacttgcactcagtgtgggacgAGTTTCAGCacatcatcaaaccttaataaacacatgaagatccacactgatGTGAGAGAGTAGATGTGcttggagtgtgagaagacttttattacagctgcagaattaaaacggcaccagaggattcacactagaGCAAAACCATATCAAAACCAGTGTTCACACTGCAGTAAGAGGTTTGCTCACTCACgaaccctgaaaacacatgagaggattcacactggagagaaaccgtagaCATGATCAGTGTGTACAGAGTTTCACTCTTTTGgggcagcttaagaaacacatgggaTGGTTTCCAGTATGGCGTCAACACATGTAGCAGCATAGAAAGAGCGTTTCCTTACACACTGGTATTGATCCTCCTTTTTACAACATATATGATAacctaaaccatatttaaataacacaaagcaagacaaaaacaaaaaggcttGGACAAAACAACCATTGAAACCTGAAAAAAAGGAGAAATAAAGAGATGAAAAA
>TCONS_00056019
atggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaagaagatctgcaggaacaaacagacctaattaaagactATGAGAAGAtcaaagaggaggaacatcatctCAAAATTGAGGACAGAAATCATTTagagactgatggcattttaaaagtgagagacaagagttgttttacctgcactcagtgtggaaagagtttggcaagtaaaagcaaacttaagattcacatgaggatccacactggagaaaaaccattcacatgcactcagtgtgggaagagtttcagttactcatcacaccttaatgaacacatgatgatccacactggaaagaaaccattcacatgcactcagtgtgggaagagtttgacAACCAAACGCAAACTTAAAATTCACACGAtgaaccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagccgctcatcatcccttaataatcacatgaagatccacactggagagaaaccatttgcatgcactcagtgtgggaagagtttcagccactcatcacaccttaataaacacatgaggattcacactggagagaaaccattcacatgcactttgtgtgggaagagtttcagccaatcatcacaccttaatgaacacatgaggatccacacgggagtgagaccattcacatgcactcagtgtgggaagagtttcagccaatcatcatacattactaaacacatgaggatccacacgggagtgagaccattcacatgcactctgtgtgggaagagtttcagccagtcATCtacccttaatctacacatgaagatccacactggagagaaaccattcacttgcactcagtgtggcaagagtttcagccaattatcacaccttaatcaacacatgatgatccacactggagagagaccatacacttgcactcagtgtgggacgAGTTTCAGCacatcatcaaaccttaataaacacatgaagattcacactggagagaaaccgtag

Function

symbol description
si:dkey-3p4.7 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000100959

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00056018 False 1593 mRNA 0.42 3 37230587 37236494
TCONS_00056019 True 1038 mRNA 0.42 3 37230842 37235635

Neighbor

gene id symbol gene type direction distance location
XLOC_028945 NA coding downstream 58282 36764140 ~ 37172305 (-)
XLOC_028948 si:dkeyp-87d1.1 coding downstream 436929 36792274 ~ 36793658 (-)
XLOC_028947 si:dkeyp-87d1.1 coding downstream 438443 36791732 ~ 36792144 (-)
XLOC_028946 si:dkeyp-87d1.1 coding downstream 439192 36789137 ~ 36791395 (-)
XLOC_028944 NA coding downstream 644948 36585319 ~ 36585639 (-)
XLOC_028950 NA coding upstream 30716 37267210 ~ 37271230 (-)
XLOC_028951 NA coding upstream 35524 37272018 ~ 37273043 (-)
XLOC_028952 NA coding upstream 92033 37328527 ~ 37333793 (-)
XLOC_028953 NA coding upstream 142643 37379137 ~ 37380416 (-)
XLOC_028954 si:dkey-106c17.2 coding upstream 239873 37476367 ~ 37479399 (-)
XLOC_028943 NA non-coding downstream 647219 36581203 ~ 36583368 (-)
XLOC_028941 NA non-coding downstream 734293 36494958 ~ 36496294 (-)
XLOC_028935 NA non-coding downstream 1419349 35809453 ~ 35811238 (-)
XLOC_028956 NA non-coding upstream 369915 37606409 ~ 37607499 (-)

Expression


Co-expression Network