XLOC_028950


Basic Information

Item Value
gene id XLOC_028950
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 37267210 ~ 37271230 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058266
CAGAAAAAACGAGAAACGTCTTCATGACATAAAAAAGGAATtcaacacaaacattcacatgAATGACCACAGCCAGGTTGTGTTAGaaAATCCATCctccacagagaaatgaatgGACATGTCACTTGGTCCACTGACAGCACTGCCAGAAAATATTGTGACTTTACAAACGACCGCTGCATCACCAGGCATAACATCAGTCACATCTCCTCTGTCATCagtaccaattacagaaaaaacagCTTGTGAACCTACCACTCTTCTGAATTTTTTGGAACCTACTAAGCCTTGGGAGAGGGACTGGCATCCATTACAAGAGAAACTGcttgATTATGTGCTGGACCGAAATCGCCCTGGCAGTGAAATAATTGTGAAGGAGGGGCAAGTGTGCCTTATTCGAGAAGAATTTTGGAGCCTTGGATTGTTGAGGGACATGGACTTCCATATTGGAAACGCCTGCATGAAGCTTATTTGTAAAATGGCTCGACAAATTGGCAAGGACATATACATTGAGGACTTTTATGTTTTCCCTGTGTGGAAAGAAACTCCTAACAACATTGTTACTGGATTACCGGAAGATGCAGACTTGAAAAACCTGTTAGCCTTTCCAGCATGGACAAATGCCAATGGACCAGACCACTTTGTTGTCTGTGAAAATTGCTTACCAAGTGGATCATGGGACATGGTCTGAAAAGACTGGATATGATTTTCCAGCTTTGCCACGTCAGACAAGAGGGAATGATTGTGGTGTTTTTGTACTCATGTACACCCTCTCAATGGTGTGTGGCATTGGGTTTCAATTCCAGgagATGGATATACCTATCATCCGTCAGTGGTGGTGCCTTCTACTCATGGAACAATTTCAAACTGATGGTAtttcaccgactcggtcccagtaactcccctcactggccagcagaggccaccatctccggacttttagcattacgtcatccatctacactgattgcgcatacacctgattggaatctggctaatgacccacgtacctcttataagccgcactcaaacactcgatcagggcgaagtcttgtttagccccggccagcatttctgagcatgatctccagcctgatctcctgtgcacgactccagcctgtctcttactttgcttcgcattctgcctgcccacgacccatgcttgttatacggactctgactctctctctgcctgcccacgaaccacgcctgttatacggactctgatccttgctgcctgcccttgacccaagcctgCATAACAGATCCTGGTTCTCGCTCACTCCCTTccactcatgcctggtaactcactctgtgtctgttcatcatcagtcttgatacccatactactactgtggatgtgtgtgtgcactccggtgcatattgtgtgtttgagtgaagttgtgattaataaatattgcataatggatccctccgtgtcagtctccacgTTACACAGTAATTATGGATTTTGTCTTGTCTTGTTATTAAAAGCTATGGGCACAGATTTGCTTTCTGGACTGAGAAGGCAAGAAGTGTCTTGGATGGAAAAATTCTGCTCCTTTTTAGGGTGAAAAGAAAAACCACATCCAATCTTCCGGCACATGTCCAAGCAGTTCAAGATTGGGAAAGGAATGACAAAAGATTAGTGGACTTGATTATCACATCAAAATCACCAGAGCAGCATTTGGTGGTATAGATGGTTCCACTTTAAATTACTCCTCTAGACTCTGAGTATGGTTGACTTAAATATAGTCAAGTGACAATTTGACTATTATTtgccaaatataattaattacttgTGCATTTACATATGAAATATAATTTCCTTCTATGGCCCAAAGGATATACTCAGTGGGAAAAGGTCAAATTGGTTTCCACTAAACCCCGTTCTCAAGTGCCTGTCTTCATTGAGAATGAGCAGTCCCAGTCAATCATTTATGACTACATCAGAGGAATTCTTAATCAAACCAAAACACAGCTGACCTTCAATGATGAGGTGGAGTTCATTTGTGGATGTCTCCTCCCAGAGGCCATAACTCATGGCATTTCCGAGTTACAAGGCTTGTCTTGGCAGGAGGCTGAAGATGTCTTCCTCCAGGGCCCCATTTATCACGCAagtgaagTTGAGGAATTTAACAGAAGAATTGCTCGagaaatgaaaaatctccccaacaagaatctcgatgacttgtaggacctcatgaaaatttataaaaaaaataaagtttgatgTGAGAAAATTA
>TCONS_00056020
CAGAAAAAACGAGAAACGTCTTCATGACATAAAAAAGGAATtcaacacaaacattcacatgAATGACCACAGCCAGGTTGTGTTAGaaAATCCATCctccacagagaaatgaatgGACATGTCACTTGGTCCACTGACAGCACTGCCAGAAAATATTGTGACTTTACAAACGACCGCTGCATCACCAGGCATAACATCAGTCACATCTCCTCTGTCATCagtaccaattacagaaaaaacagCTTGTGAACCTACCACTCTTCTGAATTTTTTGGAACCTACTAAGCCTTGGGAGAGGGACTGGCATCCATTACAAGAGAAACTGcttgATTATGTGCTGGACCGAAATCGCCCTGGCAGTGAAATAATTGTGAAGGAGGGGCAAGTGTGCCTTATTCGAGAAGAATTTTGGAGCCTTGGATTGTTGAGGGACATGGACTTCCATATTGGAAACGCCTGCATGAAGCTTATTTGTAAAATGGCTCGACAAATTGGCAAGGACATATACATTGAGGACTTTTATGTTTTCCCTGTGTGGAAAGAAACTCCTAACAACATTGTTACTGGATTACCGGAAGATGCAGACTTGAAAAACCTGTTAGCCTTTCCAGCATGGACAAATGCCAATGGACCAGACCACTTTGTTGTCTGTGAAAATTGCTTACCAAGTGGATCATGGGACATGGTCTGAAAAGACTGGATATGATTTTCCAGCTTTGCCACGTCAGACAAGAGGGAATGATTGTGGTGTTTTTGTACTCATGTACACCCTCTCAATGGTGTGTGGCATTGGGTTTCAATTCCAGgagATGGATATACCTATCATCCGTCAGTGGTGGTGCCTTCTACTCATGGAACAATTTCAAACTGATGGGTatgtcagtatttatttatttttcttgtaaatctgtaaaattaaaaatttatattgtgTCAATACAACAACTTGTAACATGAATAACAAAACATACTTAAAATCTCTCTTACCAGTGACCAGTAtttcaccgactcggtcccagtaactcccctcactggccagcagaggccaccatctccggacttttagcattacgtcatccatctacactgattgcgcatacacctgattggaatctggctaatgacccacgtacctcttataagccgcactcaaacactcgatcagggcgaagtcttgtttagccccggccagcatttctgagcatgatctccagcctgatctcctgtgcacgactccagcctgtctcttactttgcttcgcattctgcctgcccacgacccatgcttgttatacggactctgactctctctctgcctgcccacgaaccacgcctgttatacggactctgatccttgctgcctgcccttgacccaagcctgCATAACAGATCCTGGTTCTCGCTCACTCCCTTccactcatgcctggtaactcactctgtgtctgttcatcatcagtcttgatacccatactactactgtggatgtgtgtgtgcactccggtgcatattgtgtgtttgagtgaagttgtgattaataaatattgcataatggatccctccgtgtcagtctccacgTTACACAGTAATTATGGATTTTGTCTTGTCTTGTTATTAAAAGCTATGGGCACAGATTTGCTTTCTGGACTGAGAAGGCAAGAAGTGTCTTGGATGGAAAAATTCTGCTCCTTTTTAGGGTGAAAAGAAAAACCACATCCAATCTTCCGGCACATGTCCAAGCAGTTCAAGATTGGGAAAGGAATGACAAAAGATTAGTGGACTTGATTATCACATCAAAATCACCAGAGCAGCATTTGGTGGTATAGATGGTTCCACTTTAAATTACTCCTCTAGACTCTGAGTATGGTTGACTTAAATATAGTCAAGTGACAATTTGACTATTATTtgccaaatataattaattacttgTGCATTTACATATGAAATATAATTTCCTTCTATGGCCCAAAGGATATACTCAGTGGGAAAAGGTCAAATTGGTTTCCACTAAACCCCGTTCTCAAGTGCCTGTCTTCATTGAGAATGAGCAGTCCCAGTCAATCATTTATGACTACATCAGAGGAATTCTTAATCAAACCAAAACACAGCTGACCTTCAATGATGAGGTGGAGTTCATTTGTGGATGTCTCCTCCCAGAGGCCATAACTCATGGCATTTCCGAGTTACAAGGCTTGTCTTGGCAGGAGGCTGAAGATGTCTTCCTCCAGGGCCCCATTTATCACGCAagtgaagTTGAGGAATTTAACAGAAGAATTGCTCGagaaatgaaaaatctccccaacaagaatctcgatgacttgtaggacctcatgaaaatttataaaaaaaataaagtttgatgTGAGAAAATTA
>TCONS_00056021
TGTGCCTTATTCGAGAAGAATTTTGGAGCCTTGGATTGTTGAGGGACATGGACTTCCATGGCAAGGACATATACATTGAGGACTTTTATGTTTTCCCTGTGTGGAAAGAAACTCCTAACAACATTGTTACTGGATTACCGGAAAATTGCTTACCAAGTGGATCATGGGACATGGTCTGAAAAGACTGGATATGATTTTCCAGCTTTGCCACGTCAGACAAGAGGGAATGATTGTGGTGTTTTTGTACTCATGTACACCCTCTCAATGGTGTGTGGCATTGGGTTTCAATTCCAGgagATGGATATACCTATCATCCGTCAGTGGTGGTGCCTTCTACTCATGGAACAATTTCAAACTGATGGTAtttcaccgactcggtcccagtaactcccctcactggccagcagaggccaccatctccggacttttagcattacgtcatccatctacactgattgcgcatacacctgattggaatctggctaatgacccacgtacctcttataagccgcactcaaacactcgatcagggcgaagtcttgtttagccccggccagcatttctgagcatgatctccagcctgatctcctgtgcacgactccagcctgtctcttactttgcttcgcattctgcctgcccacg
>TCONS_00056022
atgGACATGTCACTTGGTCCACTGACAGCACTGCCAGAAAATATTGTGACTTTACAAACGACCGCTGCATCACCAGGCATAACATCAGTCACATCTCCTCTGTCATCagtaccaattacagaaaaaacagCTTGTGAACCTACCACTCTTCTGAATTTTTTGGAACCTACTAAGCCTTGGGAGAGGGACTGGCATCCATTACAAGAGAAACTGcttgATTATGTGCTGGACCGAAATCGCCCTGGCAGTGAAATAATTGTGAAGGAGGGGCAAGTGTGCCTTATTCGAGAAGAATTTTGGAGCCTTGGATTGTTGAGGGACATGGACTTCCATATTGGAAACGCCTGCATGAAGCTTATTTGTAAAATGGCTCGACAAATTGGCAAGGACATATACATTGAGGACTTTTATGTTTTCCCTGTGTGGAAAGAAACTCCTAACAACATTGTTACTGGATTACCGGAAGATGCAGACTTGAAAAACCTGTTAGCCTTTCCAGCATGGACAAATGCCAATGGACCAGACCACTTTGTTGTCTGTGAAAATTGCTTACCAAGTGGATCATGGGACATGGTCTGAAAAGACTGGATATGATTTTCCAGCTTTGCCACGTCAGACAAGAGGGAATGATTGTGGTGTTTTTGTACTCATGTACACCCTCTCAATGGTGTGTGGCATTGGGTTTCAATTCCAGgagATGGATATACCTATCATCCGTCAGTGGTGGTGCCTTCTACTCATGGAACAATTTCAAACTGATGGTAtttcaccgactcggtcccagtaactcccctcactggccagcagaggccaccatctccggacttttagcattacgtcatccatctacactgattgcgcatacacctgattggaatctggctaatgacccacgtacctcttataagccgcactcaaacactcgatcagggcgaagtcttgtttag

Function

GO:

id name namespace
GO:0046040 IMP metabolic process biological_process
GO:0046083 adenine metabolic process biological_process
GO:0046084 adenine biosynthetic process biological_process
GO:0044786 cell cycle DNA replication biological_process
GO:0006188 IMP biosynthetic process biological_process
GO:0006189 'de novo' IMP biosynthetic process biological_process
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000100565

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058266 False 2246 lncRNA 0.43 15 37267210 37271230
TCONS_00056020 False 2369 processed_transcript 0.42 14 37267210 37271230
TCONS_00056021 False 642 processed_transcript 0.47 7 37268567 37270590
TCONS_00056022 True 947 transcribed_unprocessed_pseudogene 0.45 11 37268662 37271042

Neighbor

gene id symbol gene type direction distance location
XLOC_028949 si:dkey-3p4.7 coding downstream 30716 37230587 ~ 37236494 (-)
XLOC_028945 NA coding downstream 94905 36764140 ~ 37172305 (-)
XLOC_028948 si:dkeyp-87d1.1 coding downstream 473552 36792274 ~ 36793658 (-)
XLOC_028947 si:dkeyp-87d1.1 coding downstream 475066 36791732 ~ 36792144 (-)
XLOC_028946 si:dkeyp-87d1.1 coding downstream 475815 36789137 ~ 36791395 (-)
XLOC_028951 NA coding upstream 788 37272018 ~ 37273043 (-)
XLOC_028952 NA coding upstream 57297 37328527 ~ 37333793 (-)
XLOC_028953 NA coding upstream 107907 37379137 ~ 37380416 (-)
XLOC_028954 si:dkey-106c17.2 coding upstream 205137 37476367 ~ 37479399 (-)
XLOC_028955 znf1100 coding upstream 306297 37577527 ~ 37587110 (-)
XLOC_028944 NA non-coding downstream 681571 36585319 ~ 36585639 (-)
XLOC_028943 NA non-coding downstream 683842 36581203 ~ 36583368 (-)
XLOC_028941 NA non-coding downstream 770916 36494958 ~ 36496294 (-)
XLOC_028935 NA non-coding downstream 1455972 35809453 ~ 35811238 (-)
XLOC_028956 NA non-coding upstream 335179 37606409 ~ 37607499 (-)
XLOC_028959 BX510935.2 non-coding upstream 458889 37730119 ~ 37730282 (-)

Expression


Co-expression Network