XLOC_028953


Basic Information

Item Value
gene id XLOC_028953
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 37379137 ~ 37380416 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057384
TAAAGACAGAATTGGCAATGACAGATGACACGCTTAAAGCCTGGAGCAAAGAAATCCAGGAATGGGCTGATAcagCAACAAGTGAGGCGAACATGGGCAGTGACCAGGGGCTCCAAAAGACGATTGAGTCGCTTTATGAGAGCATCAGGCAGAGGAAGCAAGATCTTTACCGTCAATCAGatGGAAACAAGAGAAGACACAAAATCCGCAGAAAGATTTGGGAGGAAAAAGCTAAATTCATTGCAGCTATTGATGAATACAACAGGGCAGCACCTCAGAAATTGCAGTCAGCTGACACAATTCTGGCATCCGAGGGCTATGCATGGCCGTGGGT
>TCONS_00058267
CAGATGACACGCTTAAAGCCTGGAGCAAAGAAATCCAGGAATGGGCTGATAcaggtaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtatacTTGGGTATATATATGATACACATACATAGAAACTTGGtgacataaatatttaaatctatatatattttgtatttcatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcatacaagtgtttattttaagacataacagtacacacacatttattatacataaatacataacttATTTTTGATGCAATTAATCACGGTAAATTTTTTTGCCCTGCAGTAGTTTTAAGCCTTTCATTGACATAATTTAGACAGCTGACAGTAATGATGTGTAAAATTGTTTATTATTGAAATTACATTCCATACCTTTCATATAATCATGATGTGCATATGTATGTCTTATCAACAATTTAGCAACAAGTGAGGCGAACATGGGCAGTGACCAGGGGCTCCAAAAGACGATTGAGTCGCTTTATGAGAGCATCAGGCAGAGGAAGCAAGATCTTTACCGTCAATCAGGTTATATAACTTTAGATATTATTCAAACACATTTGTTGGGTTTTGTCTGATTAATCTGACCTGATTGATTGATCTGATTGTCTGAGTATTGAAATCCGGCTTCTTAAAACACATGGTCAATTTCCATGGTCCAGGCCAAAAAGAAGTGGGCAGCTTTGAGGCCTGAGATGGTGTAGTCTTTATTAATAGCTGAGTATACAAAGATTAACTCCTGTTGGTGACTGTTGGCAGTAATCAGGGTTGTATAACCTGGCTGAACATGTTCAGTGAGCCTATGTTGGAGAATTCTGAACATGGCAGTTATTCTTCCTATATTTCTAAATCATCAAAAATCCAACAAAAGTTTTGATGTTTAAGGTTTGTCTGCatgtttgttttaacattgttgcattattttataatatttgttttataagaATTGGGAAAGCACAAGTTTGATGGGAAAAAGGTTTTAAATTGTCTTttcatatttattacatatttttaagatGGAAACAAGAGAAGACACAAAATCCGCAGAAAGATTTGGGAGGAAAAAGCTAAATTCATTGCAGCTATTGATGAATACAACAGGGCAGCACCTCAGAAATTGCAGTCAGCTGACACAAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057384 False 334 lncRNA 0.47 3 37379137 37380416
TCONS_00058267 True 1226 lncRNA 0.34 1 37379170 37380395

Neighbor

gene id symbol gene type direction distance location
XLOC_028952 NA coding downstream 45344 37328527 ~ 37333793 (-)
XLOC_028951 NA coding downstream 106094 37272018 ~ 37273043 (-)
XLOC_028950 NA coding downstream 107907 37267210 ~ 37271230 (-)
XLOC_028949 si:dkey-3p4.7 coding downstream 142643 37230587 ~ 37236494 (-)
XLOC_028948 si:dkeyp-87d1.1 coding downstream 585479 36792274 ~ 36793658 (-)
XLOC_028954 si:dkey-106c17.2 coding upstream 95951 37476367 ~ 37479399 (-)
XLOC_028955 znf1100 coding upstream 197111 37577527 ~ 37587110 (-)
XLOC_028956 NA coding upstream 225993 37606409 ~ 37607499 (-)
XLOC_028957 si:dkey-3p4.1 coding upstream 295747 37676163 ~ 37696534 (-)
XLOC_028958 znf1139 coding upstream 321060 37701476 ~ 37708661 (-)
XLOC_028945 NA non-coding downstream 206832 36764140 ~ 37172305 (-)
XLOC_028944 NA non-coding downstream 793498 36585319 ~ 36585639 (-)
XLOC_028959 BX510935.2 non-coding upstream 349703 37730119 ~ 37730282 (-)
XLOC_028960 BX510935.1 non-coding upstream 351013 37731429 ~ 37731577 (-)
XLOC_028962 NA non-coding upstream 399440 37779856 ~ 37783475 (-)
XLOC_028963 CR759843.4 non-coding upstream 641058 38021474 ~ 38021637 (-)

Expression


Co-expression Network