G1011315 (LOC106580585)


Basic Information

Item Value
gene id G1011315
gene name LOC106580585
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 69590593 ~ 69592141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1150336
gctgttagtgtgtgtgtataccatCTGAATCGTCATCTGGCTGGTCAATATCTAGCTGGGTGGTTTCCTGTGTtgggtgtgtatagtgtatatggATTATGTGTGTAATTAGATTATGTCTGGTTATTTGGTGGGTATAGTTTAAATGGTGTGTGTAATTGGATTATGACTGGTTATTTGGTGTGTATAGtttatatggtgtgtgtagtttatatggtgtgtgtagtTAGATTATGACTGGTTATTTGGTGTGTGTAGTTTATATGGTGTGTGTAATTAGATTTTGACTGGTTATTTGGTGTGTGTAGTTTATATGGTGTGTGTACCTGGATCATGACTGGTTGTTTGGTGGGTCCAGAGGAGGTAAGGTTCTCCAGGTTCCCACTGCGTTCATAGTAGAAGGTGGCTCCGCCTGCCTTGTACTCCCCGTTCCATTGGATGATGTACTGGCCATTCAGGAAGTACTCCTCTGACATCTGACCCCGCAGAGCCAGGAAGTTCCCCGCCTCCTCCACTTCCTGGACAACAATGTCACGAGCCCCCTCTGGGATCACTCCCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1150336 True 559 lncRNA 0.45 2 69590593 69592141
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110536303 LOC106580590 coding upstream 105662 69471050 ~ 69484931 (+)
ercc8 ercc8 coding upstream 133770 69435319 ~ 69456823 (+)
LOC110536300 LOC106580593 coding upstream 190359 69398535 ~ 69400234 (+)
LOC110536297 LOC106580555 coding upstream 330676 69210550 ~ 69259917 (+)
LOC110536644 LOC106580559 coding upstream 381261 69207662 ~ 69209332 (+)
agpat9l LOC106580584 coding downstream 49948 69642089 ~ 69655067 (+)
LOC110536313 LOC106580580 coding downstream 105820 69696110 ~ 69705172 (+)
sb:cb288 NA coding downstream 113193 69705334 ~ 69711411 (+)
pold2 pold2 coding downstream 134626 69726767 ~ 69738390 (+)
LOC110536321 LOC106580575 coding downstream 306420 69898561 ~ 69903158 (+)
G1011109 LOC106580587 non-coding upstream 66462 69523420 ~ 69524131 (+)
G1011039 NA non-coding upstream 238323 69352037 ~ 69352270 (+)
G1011034 NA non-coding upstream 246146 69344132 ~ 69344447 (+)
G1011033 NA non-coding upstream 262856 69327197 ~ 69327737 (+)
G1011032 NA non-coding upstream 263578 69326580 ~ 69327015 (+)
G1011318 NA non-coding downstream 2907 69595048 ~ 69595470 (+)
G1011339 NA non-coding downstream 43478 69635619 ~ 69635837 (+)
G1011340 NA non-coding downstream 44028 69636169 ~ 69636381 (+)
G1011352 NA non-coding downstream 65434 69657575 ~ 69657839 (+)
G1011353 NA non-coding downstream 67140 69659281 ~ 69664497 (+)
LOC110535101 LOC106580561 other upstream 765593 68687221 ~ 68847333 (+)
LOC110536291 LOC106580540 other upstream 1003551 68584627 ~ 68587134 (+)
G1008017 NA other upstream 2708342 66881799 ~ 66882251 (+)
LOC110536267 LOC106580513 other upstream 2792376 66774135 ~ 66798230 (+)
G1011336 NA other downstream 41360 69633501 ~ 69633876 (+)
LOC110536323 LOC106580573 other downstream 312807 69904948 ~ 69917078 (+)
LOC110536331 LOC106580567 other downstream 409328 70001416 ~ 70009325 (+)
G1011531 NA other downstream 426962 70019103 ~ 70019906 (+)

Expression

G1011315(LOC106580585) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
End of interactive chart.

G1011315(LOC106580585) Expression in each Bioproject

Bar chart with 12 bars.
G1011315(LOC106580585) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.

Co-expression Network