G1011353


Basic Information

Item Value
gene id G1011353
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 69659281 ~ 69664497 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1150381
cttcttgaactgcactgttggtttagggcttgtaagtaagcatttcacggtaatacacttgttgtattcggccaatgtgacaaataaagtttgatttgatttgaaacaagcCTAAACATTTCACAGACAGGTGTTGAGTTTtgaaaatgtctttaatgtattGGCAAAAGACGAGCACAGAGGAGATTCCAGTTCTGCCCTATCAGGTGTCAGAAGGTCTTTAGGACTCCTCCTTCTCGTCTCCGTGTGTAATGATGTAACACAGTGACTTGTAGTCGATGTTGCCGGCCACGTCAATTGGAGCCACAGAGAAGGCCTGATCCACCCATCTGCTGTGAATTTATCAGCCTGGTTCATCAATAATCGTctaaaTCATCCTTGTTGACGAAGCCTGTGCCGTTTGGGTCAAAGAGCTTGAAGGCTGCGAGGATGGTGTCCTCAGGGTCTGTGCATTGAGTTTCTCCCCAAACAAAGAGAGGAAAACGGTGAAGTTGATGGGACCCTTCCCCTCGTTCAACATCTCATCCAGCTCCTCATCCTTTACGTTCAACTTTCTACCTAGCTGTCCATAGGTTTCCCTCAGATCCTGTTTTTTGATGACACCATCTCTGTCTTGGTCAATACAGCCGAAGCCTCCTTAAACTCCTGTATCTGGGACTGTTCGAACATGGAGAAGACATTGGAGCAGCTCTTCTgggctcctctctgtctcttattAGCAGCCTTCTTACTGGCCTGAGAAACCAGGACAAATTGACAG
>TU1150387
cttcttgaactgcactgttggtttagggcttgtaagtaagcatttcacggtaatacacttgttgtattcggccaatgtgacaaataaagtttgatttgatttgaaacaagcCTAAACATTTCACAGACAGGTGTTGAGTTTtgaaaatgtctttaatgtattGGCAAAAGACGAGCACAGAGGAGATTCCAGTTCTGCCCTATCAGGTGTCAGAAGGTCTTTAGGACTCCTCCTTCTCGTCTCCGTGTGTAATGATGTAACACAGTGACTTGTAGTCGATGTTGCCGGCCACGTCAATTGGAGCCACAGAGAAGGCCTGATCCACCTGAGGATTTCATCAGGAGAGTGGGGTTAGGCAACTCGTTGGGAAAGGATCAAAATAAATGTGAACAGATATTGATTCTACTGTCCTTGTAGGACTGTACTACTGATTGAatgattgatctctctctctctctagtaattTGTCAActgtgtgatttaaaaaaaaaaagtattcttGTTAAGGAGGTAAGAAGGAGTTAGACATTACCAACCTCATCTGCTGTGAATTTATCAGCCTGGTTCATCAATAATCGTctaaacctaaaaaaaaaaaacatttttgaaaagacagaacaaatcgAATAAACTAACATTATACTCTACGTCATTGTACAGTTTGGCAAACTAGGAAGAGATTCAAATGATACTGACTCATCCTTGTTGACGAAGCCTGTGCCGTTTGGGTCAAAGAGCTTGAAGGCTGCGAGGATGGTGTCCTCAGGGTCTGTGCCTGTAGAGGGAGAGTCACGGTATATTTCATAGTTCAGcttgcacggacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaatccagccTAATAACCAACAGTGTAACCCACATTATATGACATAACATCATAACATTGATATCAGGACATTCATACAGAGGAAACACTGATGAATGACTGTCCCTATGGCAAGATTAAAAGAGACTCAGCCTTCTAATTGTGAAGTAGATTGTGTGAGATGCCGAGGGATCTCACCATTGAGTTTCTCCCCAAACAAAGAGAGGAAAACGGTGAAGTTGATGGGACCCTTCCCCTCGTTCAACATCTCATCCAGCTCCTCATCCTTTACGTTCAACTTCCTAGCTGTCCATAGGTTTCCCTCAGATCCTGTTTTTTGATGACACCATCTCTGTCTTGGTCAATACAGCCGAAGCCTCCTTAAACTCCTGTATCTGGGACTGTTCGAACATGGAGAAGACATTGGAGCAGCTCTTCTgggctcctctctgtctcttattAGCAGCCTTCTTACTGGCCTGAGAAACCAGGACAAATTGACAG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1150381 False 760 lncRNA 0.46 6 69659281 69664497
TU1150387 True 1441 lncRNA 0.43 3 69659281 69664497

Neighbor

gene id symbol gene type direction distance location
agpat9l LOC106580584 coding upstream 4214 69642089 ~ 69655067 (+)
LOC110536303 LOC106580590 coding upstream 174350 69471050 ~ 69484931 (+)
ercc8 ercc8 coding upstream 202458 69435319 ~ 69456823 (+)
LOC110536300 LOC106580593 coding upstream 259047 69398535 ~ 69400234 (+)
LOC110536297 LOC106580555 coding upstream 399364 69210550 ~ 69259917 (+)
LOC110536313 LOC106580580 coding downstream 33464 69696110 ~ 69705172 (+)
sb:cb288 NA coding downstream 40837 69705334 ~ 69711411 (+)
pold2 pold2 coding downstream 62270 69726767 ~ 69738390 (+)
LOC110536321 LOC106580575 coding downstream 234064 69898561 ~ 69903158 (+)
LOC110536323 LOC106580573 coding downstream 240489 69904948 ~ 69917078 (+)
G1011352 NA non-coding upstream 1442 69657575 ~ 69657839 (+)
G1011340 NA non-coding upstream 22900 69636169 ~ 69636381 (+)
G1011339 NA non-coding upstream 23444 69635619 ~ 69635837 (+)
G1011318 NA non-coding upstream 63811 69595048 ~ 69595470 (+)
G1011315 LOC106580585 non-coding upstream 67140 69590593 ~ 69592141 (+)
G1011356 NA non-coding downstream 1106 69665603 ~ 69674474 (+)
G1011357 NA non-coding downstream 11153 69675650 ~ 69676452 (+)
G1011360 NA non-coding downstream 14876 69679373 ~ 69679584 (+)
G1011336 NA other upstream 25405 69633501 ~ 69633876 (+)
LOC110535101 LOC106580561 other upstream 834281 68687221 ~ 68847333 (+)
LOC110536291 LOC106580540 other upstream 1072239 68584627 ~ 68587134 (+)
G1008017 NA other upstream 2777030 66881799 ~ 66882251 (+)
LOC110536331 LOC106580567 other downstream 336972 70001416 ~ 70009325 (+)
G1011531 NA other downstream 354606 70019103 ~ 70019906 (+)
LOC110536338 LOC106580595 other downstream 464785 70128401 ~ 70134490 (+)

Expression

G1011353 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 15.
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G1011353 Expression in each Bioproject

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G1011353 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network