XLOC_002896 (pimr144)



Basic Information


Item Value
gene id XLOC_002896
gene name pimr144
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34086591 ~ 34107919 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00005346
AGTATAAAGCTTTTTGACATAGCAGAAACTCTCAGTAGCTTCTTTGGATGtctagtagttcagtactttctgcgATTCAACAGTACAGTGATACAATGGCATTTTCAAAACTGATTAACCGTCTGAAGAAAGCGTTTGGTGTTAAGTGTGCGAACGAACAACCGTGTGAGCCACTCGAACCCACCGGCAGCACGACAGAGAATCACCGTCATCTGATGACCGATGACCCGGCCGTCGCTGCAGGAAAACAGGCAGGGAGACAGAAAAAGAGGAAACTCAAATTGTCTCCCATCTTCTTCGCCTGTTTTTCCAGAAGAAGAGCTACTGTTGTTGATCAGCTATGTGTGCAGGAGATCCACGAACTTCACGCAGAGCCCATCAGTAGCTCTAAATTCTTCTGCACTGCTGTGAGCAACCTGGAGCTGGAAGTTCTCCAACCTCCAGCTCTTGATGCTCCAGCAGACGAAGATTTGGACTCTAAACCTGAAGTGAACAGCTTTGACTCTGCAGTGGTCATTGAGAACGACTCTGCAGAGCTTCACTTCCCAGAAGACATTGAATCCTCCCTCAGTGAGGACAGCCTGGAGCAAGAGCTTGATAGTCCTCCAAGTTCACCATCTGATGAGGACAATGAACTTCCAGTGAGCCAGCAGCTCATAACAGATGACATCTGTGACTCTGCCCTGGATGAAAACTCGAACCCTCCACCGGATCAGGTCTCACAAGAGGACTCTGCTGTGAAGTCTACAGCAGATGatgggacctgcttggacaataATGACATCAGCTGCCGCTACAAACTCGGAAAGCAGCTTGGTGAAGGAGGTTTCGGCTCCGTGTATGAGGGGATTCGCATACAGGATGGTCTGCAGGTGGCAGTTAAATTTGTCCAGAAGACCCCAAATATGCAAGATGTCAGCTCTtcatgtgaccaGCCACTTCCTTTAGAGATCACCTTGGCAAACATGGCCAGCGGTGGCTCCAGGTGTTCGTACATTATTCAGCTTCTGGACTGGCAGGTCTTTGAAAACCATTACGTCATGGTGATGGAGCGGCCTAGTCCAAGCATGGACCTGGAGGCATTCCTTGAAGTCAGCGGAGGAGTCCTCAGTGAGAAAACAGCACATACCATCATGAGGCAAGCTGTTTATGCGGCCAACGTGTGCTGTTACCGCGGGGTGTTCCACCGGGACATTAAGCTTCAAAACCTGCTGGTGAACCCCGACACACTGGAAGTCAAGCTGATCGACTTCGGGTGTGGAGACTTCATGATGGAATCAGCCTACAGTATCTTCTCTGGCACAGAAGCGTACATCCCGCCAGAGTTTTATGAAAAAGGATGCTACCGGGCCAAACCAGCGACGGTCTATTCTCTTGGGGTTCTTCTGTTCACAATGCTCCATGGAGAATTCCCATCAGCGTATGACCTGTACTACCTCCAACATGACTGgtccaaatttaccctctctcaagAATGCTGTGATATGATGAGGGCTTGTCTGCATGAGAATCCAGAGTGCAGAATTCCTCTAGAAGAGATGCCTTACCACGACTGGTCCATGCTGGAGTTCTGAGTCACATTAGCagaatgttttgtatatttgatttttgtacatgtctgtaataaagatatattttattgAA
>TCONS_00005347
AGTATAAAGCTTTTTGACGTAGCAGAAACTCTCATTAGCTTCTTTGGATGtctagtagttcagtactttctgcgATTCAACAGTACAGTGATACAATGGCATTTTCAAAACTGATTAACCGTCTGAAGAAAGCGTTTGGTGTTAAGTGTGCGAACGAACAACCGTGTGAGCCACTCGAACCCACCGGCAGCACGACAGAGAATCACCGTCATCTGATGACCGATGACCCGGCCGTCGCTGCAGGAAAACAGGCAGGGAGACAGAAAAAGAGGAAACTCAAATTGTCTCCCATCTTCTTCGCctgtttctccagaagaagagcTACTGTTGTTGATCAGCTATGTGTGCAGGAGATCCACGAACTTCACGCAGAGCCCATCAGTAGCTCTAAATTCTTCTGCACTGCTGTGAGCAACCTGGAGCTGGAAGTTCTCCAACCTCCAGCTCTTGATGCTCCAGCAGACGAAGATTTGGACTCTAAACCTGAAGTGAACAGCTTTGACTCTGCAGTGGTCATTGAGAACGACTCTGCAGAGCTTCACTTCCCAGAAGACATTGAATCCTCCCTCAGTGAGGACAGCCTGGAGCAAGAGCTTGATAGTCCTCCAAGTTCACCATCTGATGAGGACAATGAACTTCCAGTGAGCCAGCAGCTCATAACAGATGACATCTGTGACTCTGCCCTGGATGAAAACTCGAACCCTCCACCGGATCAGGTCTCACAAGAGGACTCTGCTGTGAAGTCTACAGCAGATGatgggacctgcttggacaataATGACATCAGCTGCCGCTACAAACTCGGAAAGCAGCTTGGTGAAGGAGGTTTCGGCTCCGTGTATGAGGGGATTCGCATACAGGATGGTCTGCAGGTGGCAGTTAAATTTGTCCAGAAGACCCCAAATATGCAAGATGTCAGCTCTtcatgtgaccaGCCACTTCCTTTAGAGATCACCTTGGCAAACATGGCCAGCGGTGGCTCCAGGTGTTCGTACATTATTCAGCTTCTGGACTGGCAGGTCTTTGAAAACCATTACGTCATGGTGATGGAGCGGCCTAGTCCAAGCATGGACCTGGAGGCATTCCTTGAAGTCAGCGGAGGAGTCCTCAGTGAGAAAACAGCACATACCATCATGAGGCAAGCTGTTTATGCGGCCAACGTGTGCTGTTACCGCGGGGTGTTCCACCGGGACATTAAGCTTCAAAACCTGCTGGTGAACCCCGACACACTGGAAGTCAAGCTGATCGACTTCGGGTGTGGAGACTTCATGATGGAATCAGCCTACAGTATCTTCTCTGGCACAGAAGCGTACATCCCGCCAGAGTTTTATGAAAAAGGATGCTACCGGGCCAAACCAGCGACGGTCTATTCTCTTGGGGTTCTTCTGTTCACAATGCTCCATGGAGAATTCCCATCAGCGTATGACCTGTACTACCTCCAACATGACTGgtccaaatttaccctctctcaagAATGCTGTGATATGATGAGGGCTTGTCTGCATGAGAATCCAGAGTGCAGAATTCCTCTAGAAGAGATGCCTTACCACGACTGGTCCATGCTGGAGTTCTGAGTCACATTAGCagaatgttttgtatatttgatttttgtacatgtctgtaataaagatatattttattg
>TCONS_00005348
AGTATAAAGCTTTTTGACGTAGCAGAAACTCTCATTAGCTTCTTTGGATGtctagtagttcagtactttctgcgATTCAACAGTACAGTGATACAATGGCATTTTCAAAACTGATTAACCGTCTGAAGAAAGCGTTTGGTGTTAAGTGTGCGAACGAACAACCGTGTGAGCCACTCGAACCCACCGGCAGCACGACAGAGAATCACCGTCATCTGATGACCGATGACCCGGCCGTCGCTGCAGGAAAACAGGCAGGGAGACAGAAAAAGAGGAAACTCAAATTGTCTCCCATCTTCTTCGCctgtttctccagaagaagagcTACTGTTGTTGATCAGCTATGTGTGCAGGAGATCCACGAACTTCACGCAGAGCCCATCAGTAGCTCTAAATTCTTCTGCACTGCTGTGAGCAACCTGGAGCTGGAAGTTCTCCAACCTCCAGCTCTTGATGCTCCAGCAGACGAAGATTTGGAATCTAAACCGGAAATGAACAGCTTTGACTCTGCAGTGGTCATTGAGAACGACTCTGCAGAGCTTCACTTCCCAGAAGACATTGAATCCTCCCTCAGTGAGGACAGCCTGGAGCAAGAGCTTGATAGTCCTCCAAGTTCACCATCTGATGAGGACAATGAATCTCCAGTGAGCCAGCAGTTCATAACAGATGACATCTGTGACTCTGCCCTGGATGAAAACTCAAACCCTTTACCGGATCAGGTCTCACAAGAGGACTCTGCTGTGAAGTCTACAGCAGATGatgggacctgcttggacaataATGACATCAGCTGCCGCTACAAACTCGGAAAGCAGCTTGGTGAAGGAGGTTTCGGCTCCGTGTATGAGGGGATTCGCATACAGGATGGTCTGCAGGTGGCAGTTAAATTTGTCCAGAAGACCCCAAATATGCAAGATGTCAGCTCTtcatgtgaccaGCCACTTCCTCTAGAGATCACCTTGGCAAACATGGCCAGCGGTGGCTCCAGGTGTTCGAACATTATTCAGCTTCTGGACTGGCAGGTCTTTGAAAACCATTATGTCATGGTGATGGAGCGGCCTAGTCCAAGCATGGACCTGGAGGCATTCCTTGAAGTCAGCGGAGGAGTCCTCAGTGAGAAAACAGCACATACCATCATGAGGCAAGCTGTTTATGCGGCCAACGTGTGCTGTTACCGCGGGGTGTTCCACCGGGACATTAAGCTTCAAAACCTGCTGGTGAACCCCGACACACTGGAAGTCAAGCTGATCGACTTCGGGTGTGGAGACTTCATGATGGAATCAGCCTACAGTATCTTCTCTGGCACAGAAGCGTACATCCCGCCAGAGTTTTATGAAAAAGGATGCTACCGGGCCAAACCAGCGACGGTCTATTCTCTTGGGGTTCTTCTGTTCACAATGCTCCATGGAGAATTCCCATCAGCGTATGACCTGTACTACCTCCAACATGACTGgtccaaatttaccctctctcaagAATGCTGTGATATGATGAGGGCTTGTCTGCATGAGAATCCAGAGTGCAGAATTCCTCTAGAAGAGATGCCTTACCACGACTGGTCCATGCTGGAGTTCTGAGTCACATTAGCagaatgttttgtatatttgatttttgtacatgtctgtaataaagatatattttattgAA

Function


symbol description
pimr144 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0016310 phosphorylation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141211-42 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.
ZDB-GENE-141211-44 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00005346 False 1644 mRNA 0.48 7 34086591 34089779
TCONS_00005347 False 1642 mRNA 0.48 7 34086593 34107919
TCONS_00005348 True 1644 mRNA 0.48 7 34104733 34107919

Neighbor


gene id symbol gene type direction distance location
XLOC_002895 BX548044.8 coding downstream 19305 34059007 ~ 34067286 (-)
XLOC_002894 pimr149 coding downstream 39834 34043561 ~ 34046757 (-)
XLOC_002893 rfc3 coding downstream 52911 34021368 ~ 34033680 (-)
XLOC_002892 zar1l coding downstream 84406 33999869 ~ 34002185 (-)
XLOC_002891 BX569785.1 coding downstream 206227 33876131 ~ 33880364 (-)
XLOC_002897 pimr150 coding upstream 12624 34120543 ~ 34150672 (-)
XLOC_002898 pimr145 coding upstream 63755 34171674 ~ 34223567 (-)
XLOC_002899 pimr148 coding upstream 79312 34187231 ~ 34200750 (-)
XLOC_002900 NA coding upstream 88863 34196782 ~ 34198566 (-)
XLOC_002901 pimr167 coding upstream 112573 34220492 ~ 34243269 (-)
XLOC_002890 NA non-coding downstream 421802 33663165 ~ 33664789 (-)
XLOC_002885 dre-mir-130a non-coding downstream 709377 33377130 ~ 33377214 (-)
XLOC_002884 dre-mir-301a non-coding downstream 709505 33377001 ~ 33377086 (-)
XLOC_002883 dre-mir-454a non-coding downstream 709650 33376818 ~ 33376941 (-)
XLOC_002902 BX510654.1 non-coding upstream 219343 34327262 ~ 34327394 (-)
XLOC_002906 CT573139.2 non-coding upstream 843141 34951060 ~ 34959178 (-)
XLOC_002909 NA non-coding upstream 946362 35054281 ~ 35058444 (-)
XLOC_002912 BX465844.1 non-coding upstream 1052091 35160010 ~ 35164291 (-)

Expression



Co-expression Network