XLOC_028967


Basic Information

Item Value
gene id XLOC_028967
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 38146996 ~ 38147927 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057386
GGCAAGAAGTGTCTTGGATGGAAAGATTCTGCCCCTTTTTAGGGTGAAAAGAAAAACCACATCCAATCTTCCGGCACATGTCCAAGCAGTTCAAGATCGGGAAAGGAATGACTAAAGATTAGTGGACTTGATTATCACATCAAAATCAGCAGAGCAGCATTTGGTGGTATAGATGGTTCCACTTTAAATTACTCCTCTAGACTCTGAGTATGGTTGACTTAAATATAGTCAAGTGACAATTTAACTATTATTtgccaaatataattaattacttgTGCATTTACATATGAAATATAATTTCCTTCTATGGCCCAAAGGATATACTCGGTGGGAAAAGGTCAAATTGGTTTCCACTAAAACCCCGTTCTCAAGTGCCTGTCCACATTGAGAATGAGCAGTCCCAGTCAATCATTTGTGACTACATCAGAGGAATTcttaataaaaccaaaacacagCTGACCTTCAATGATGAGGCCATAACTCATGGCATTTCCGAGTTACAAGGCTTGTCTTGGCAGGAGGTTGAAGATGTCTTCCTCCAGGGCCCTATTTATCACGCAaggtatgtttacattttttttgtacaaaagctgttaagtttttatgttaaacacaatttctgacaacagcatttatttttttttagtgaagTTGAGGAATTTAACAGAAGAATTGCTCGagaaatgaaaaatctccccaacaagaatgtaaagcattttattttattttatatataataaatacattattaatccAAGTATTGTTTGTCACAATTTttctctgcattttttacagctcgatgacttgtaggacctcatgaaaatttataaaaaaataaagtttgg
>TCONS_00057385
GGCAAGAAGTGTCTTGGATGGAAAGATTCTGCCCCTTTTTAGGGTGAAAAGAAAAACCACATCCAATCTTCCGGCACATGTCCAAGCAGTTCAAGATCGGGAAAGGAATGACTAAAGATTAGTGGACTTGATTATCACATCAAAATCAGCAGAGCAGCATTTGGTGGTATAGATGGTTCCACTTTAAATTACTCCTCTAGACTCTGAGTATGGTTGACTTAAATATAGTCAAGTGACAATTTAACTATTATTtgccaaatataattaattacttgTGCATTTACATATGAAATATAATTTCCTTCTATGGCCCAAAGGATATACTCGGTGGGAAAAGGTCAAATTGGTTTCCACTAAAACCCCGTTCTCAAGTGCCTGTCCACATTGAGAATGAGCAGTCCCAGTCAATCATTTGTGACTACATCAGAGGAATTcttaataaaaccaaaacacagCTGACCTTCAATGATGAGGCCATAACTCATGGCATTTCCGAGTTACAAGGCTTGTCTTGGCAGGAGGTTGAAGATGTCTTCCTCCAGGGCCCTATTTATCACGCAagtgaagTTGAGGAATTTAACAGAAGAATTGCTCGagaaatgaaaaatctccccaacaagaatgtaaagcattttattttattttatatataataaatacattattaatccAAGTATTGTTTGTCACAATTTttctctgcattttttacagctcgatgacttgtaggacctcatgaaaatttataaaaaaataaagtttgg

Function

GO:

id name namespace
GO:0034311 diol metabolic process biological_process
GO:0022624 proteasome accessory complex cellular_component
GO:0005838 proteasome regulatory particle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057386 False 845 lncRNA 0.35 2 38146996 38147927
TCONS_00057385 True 761 lncRNA 0.36 3 38146996 38147927

Neighbor

gene id symbol gene type direction distance location
XLOC_028966 CR759843.1 coding downstream 110091 38035942 ~ 38036905 (-)
XLOC_028965 si:dkeyp-82b4.4 coding downstream 113196 38032613 ~ 38033800 (-)
XLOC_028964 CR759843.3 coding downstream 123820 38023028 ~ 38023176 (-)
XLOC_028963 CR759843.4 coding downstream 125359 38021474 ~ 38021637 (-)
XLOC_028962 NA coding downstream 363521 37779856 ~ 37783475 (-)
XLOC_028968 NA coding upstream 10412 38158339 ~ 38159864 (-)
XLOC_028969 CR381657.6 coding upstream 84152 38232079 ~ 38232152 (-)
XLOC_028970 CR381657.7 coding upstream 85706 38233633 ~ 38233739 (-)
XLOC_028971 CR381657.3 coding upstream 86233 38234160 ~ 38234266 (-)
XLOC_028972 CR381657.2 coding upstream 89190 38237117 ~ 38237190 (-)
XLOC_028960 BX510935.1 non-coding downstream 415419 37731429 ~ 37731577 (-)

Expression


Co-expression Network