XLOC_028968


Basic Information

Item Value
gene id XLOC_028968
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 38158339 ~ 38159864 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057388
GGTGTACCGTTACCAAGAGTGGGCTTATGGTTTGCATAACTTCAATGACCATGTCCTCCTTGAACTCTCTCTCTGCCTCACCATAAGAAACCTGTTGCAGGTGCATACAGCAGTGAGCAGAGTAGTGGAGTACTTGGAGGTAACTACAGGTGTACAGTTCCCCTCAGCAGTTACTCTTCTCCACGGCTATCTGCATTTTGAGGCCCTAACTGACTATGAATACGAGTATTCATGTGTATCTAGTGGTGACCATCCACCTGTGGTCATAATGGACCTCCACATGAAGGCATCCTTTCATCTCTCTGtgaGTGATCTTTCACAGCCTCCACAAGATTTTAATGGAGAGGTGGATTTAGATATGTTTTGGAAGGCACTGACAGAAGAACGAATTGCTCGAGGATTTTTTTCAAGTCAAAAAAACAATCCATTTTGTGTTACACCTAGTTACAACTTTTGGGCACCCTGGATCGGGAGTAAGACTCGCATAGCGAATGTTGTTCTCAACACTGAATTTGAGAAAGTGCACAAAGCAAAAACTGCAGAACGAACAGAAATAACTGTCTCTGAAGATCGCTTAAAGGACGAACTTTCAAAACagaaagtaaaatatttaatgctaattatatgtattatttgtcAGTGTTGGCATTTCATTTAACATGTGTGTTTTATGTGATAGGTGGGAGTGATAAGAAGACTGTGTCAAGAGTGTGGTTTAGATGCCAAAGGCTCTCGCACAGATCTACTCCTGCGACTTTCGGAGGAGATGAGGTCAAGGGAGGCCTATGACAAGATTTTTGAAAAGATCTGGGCTGCTTCAGGTAAACCTCAATGTTgcacattaaaatattacaaataaatcagaaatgtacAAAGTCACATAGACATAATGGGTCCTGTTTTCTGCTTGGCACTGATTTGGGGAGTCACTGGTGGTGTACAGCTCTGGGGGGTGTTGGAGGTGGCCTCGTCTGACACCAGGGTGTATTGTTGCTTTCCGTGTGGGGGAGTGTATTTACATCTCTGAGG
>TCONS_00057387
GGTGTACCGTTACCAAGAGTGGGCTTATGGTTTGCATAACTTCAATGACCATGTCCTCCTTGAACTCTCTCTCTGCCTCACCATAAGAAACCTGTTGCAGGTGCATACAGCAGTGAGCAGAGTAGTGGAGTACTTGGAGGTAACTACAGGTGTACAGTTCCCCTCAGCAGTTACTCTTCTCCACGGCTATCTGCATTTTGAGGCCCTAACTGACTATGAATACGAGTATTCATGTGTATCTAGTGGTGACCATCCACCTGTGGTCATAATGGACCTCCACATGAAGGCATCCTTTCATCTCTCTGtgaGTGATCTTTCACAGCCTCCACAAGATTTTAATGGAGAGGTGGATTTAGATATGTTTTGGAAGGCACTGACAGAAGAACGAATTGCTCGAGGATTTTTTTCAAGTCAAAAAAACAATCCATTTTGTGTTACACCTAGTTACAACTTTTGGGCACCCTGGATCGGGAGTAAGACTCGCATAGCGAATGTTGTTCTCAACACTGAATTTGAGAAAGTGCACAAAGCAAAAACTGCAGAACGAACAGAAATAACTGTCTCTGAAGATCGCTTAAAGGACGAACTTTCAAAACagaaaGTGGGAGTGATAAGAAGACTGTGTCAAGAGTGTGGTTTAGATGCCAAAGGCTCTCGCACAGATCTACTCCTGCGACTTTCGGAGGAGATGAGGTCAAGGGAGGCCTATGACAAGATTTTTGAAAAGATCTGGGCTGCTTCAGGTAAACCTCAATGTTgcacattaaaatattacaaataaatcagaaatgtacAAAGTCACATAGACATAATGGGTCCTGTTTTCTGCTTGGCACTGATTTGGGGAGTCACTGGTGGTGTACAGCTCTGGGGGGTGTTGGAGGTGGCCTCGTCTGACACCAGGGTGTATTGTTGCTTTCCGTGTGGGGGAGTGTATTTACATCTCTGAGG

Function

GO:

id name namespace
GO:0001944 vasculature development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057388 False 1029 lncRNA 0.43 4 38158339 38159864
TCONS_00057387 True 951 lncRNA 0.44 5 38158339 38159864

Neighbor

gene id symbol gene type direction distance location
XLOC_028967 NA coding downstream 10412 38146996 ~ 38147927 (-)
XLOC_028966 CR759843.1 coding downstream 121434 38035942 ~ 38036905 (-)
XLOC_028965 si:dkeyp-82b4.4 coding downstream 124539 38032613 ~ 38033800 (-)
XLOC_028964 CR759843.3 coding downstream 135163 38023028 ~ 38023176 (-)
XLOC_028963 CR759843.4 coding downstream 136702 38021474 ~ 38021637 (-)
XLOC_028969 CR381657.6 coding upstream 72215 38232079 ~ 38232152 (-)
XLOC_028970 CR381657.7 coding upstream 73769 38233633 ~ 38233739 (-)
XLOC_028971 CR381657.3 coding upstream 74296 38234160 ~ 38234266 (-)
XLOC_028972 CR381657.2 coding upstream 77253 38237117 ~ 38237190 (-)
XLOC_028973 CR381657.4 coding upstream 77740 38237604 ~ 38237704 (-)
XLOC_028962 NA non-coding downstream 374864 37779856 ~ 37783475 (-)

Expression


Co-expression Network