G1013751 (LOC106580620)


Basic Information

Item Value
gene id G1013751
gene name LOC106580620
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 71648700 ~ 71684595 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1153043
ccTGATCTCATTCTAATTCTGCACTACAAATGCCAAAGCCTGGGTAAGCTGATAGGTTTAGTTTCTCAAAGATATTCATAGCGGCAAGTTTTTTAAAAACTATTAAGCTGTCTTTTGTTCAGATATCACAAGATCAATGACGATTGGGTCGATGGAGTCCCACTTCATGTTCAAGAATACCATACATCCCATCCTCAAACTCCAGGGCTGCTCTGCGAATGATCCGCTCTCGTAAAATGTCGGAGTCCTTCTTTGGTTTGGGCTTCTCTGCTAGGTCCTTCTGCACTGTGCGCCTCTCTATCCTCTTCTCGTAGCAGTCTCCCTTGATGAtcctgtggatgtagatactggGGATGTGGATGTCCTCCTCAGAAAACGTCCCCacatccaccacctcctccacCTCTACGATGGTGACTTTGGCCGCCTTGCACATGGGCTGGTTGAAGTTCCTAGCTGTtttcCTGAAGACGATGTTCCCGGCCTTGTCAGCCTTCCAGGCCTTGACCAGAGCAAAGTCTCCAGTGATGGCCTTCTCCATGATGTAATGCCTGCCATTAAACTCCCGCACCTCTCTCTGTTCGCTGGCGATGGCGATAGTTCCGTCTTTGTTGTATTTGATGGGGGAGCCGCCCTCCTGGATGAGGGTACCGTAGCCTGTAGCCGTGAAGAAAGCAGGAACACCCGCACCCCCTGCTCTGATCCTCTCTGCTAGGGTACCCTGTGGGGTTAGCTCAACCTCCAGCTCCCCAGACAGGTACTGCCTCTCAAACTCAATGTTCTCTCCCACATAGGAGGAGATCATCCTCTTGATCTGTTTGGTCTGTAGGAGCAGACCAAGCCCAAAGTTATCCACCCTGCAGGGAGACAAAACAAGTTACTACACAGGTTACTATGCACAGGTTActaagcacacacaaacacaggattGCAAA

Function

NR:

description
succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1153043 True 935 lncRNA 0.50 6 71648700 71684595

Neighbor

gene id symbol gene type direction distance location
LOC110536352 LOC106580621 coding downstream 15637 71628579 ~ 71633063 (-)
LOC110536351 NA coding downstream 21204 71620800 ~ 71627496 (-)
LOC100135988 slr coding downstream 49536 71524863 ~ 71599164 (-)
LOC110536349 LOC106580618 coding downstream 159808 71473159 ~ 71488892 (-)
ubox5 LOC106580617 coding downstream 182558 71459336 ~ 71466142 (-)
LOC110536354 LOC106585207 coding upstream 153707 71838302 ~ 71846693 (-)
LOC118937382 NA coding upstream 757374 72441969 ~ 72442889 (-)
LOC110536359 LOC106580625 coding upstream 768325 72452920 ~ 72584061 (-)
LOC110536361 LOC106585212 coding upstream 913192 72597787 ~ 72647320 (-)
LOC110536362 LOC106580628 coding upstream 966064 72650659 ~ 72704404 (-)
G1013745 NA non-coding downstream 11944 71636484 ~ 71636756 (-)
G1013741 NA non-coding downstream 30182 71618311 ~ 71618518 (-)
G1013740 NA non-coding downstream 31148 71617346 ~ 71617552 (-)
G1013729 NA non-coding downstream 36961 71611450 ~ 71611739 (-)
G1013668 NA non-coding downstream 139698 71507358 ~ 71509002 (-)
G1013892 NA non-coding upstream 162858 71847453 ~ 71847833 (-)
G1013893 LOC106580708 non-coding upstream 163823 71848418 ~ 71849016 (-)
G1013894 NA non-coding upstream 164606 71849201 ~ 71849463 (-)
G1013895 NA non-coding upstream 165771 71850366 ~ 71850673 (-)
G1013901 NA non-coding upstream 174965 71859560 ~ 71859794 (-)
G1013669 NA other downstream 133266 71497308 ~ 71515434 (-)
G1012814 NA other downstream 757709 70884476 ~ 70890991 (-)
G1011014 NA other downstream 2342272 69305336 ~ 69306428 (-)
G1010922 NA other downstream 2529214 69116507 ~ 69119486 (-)
G1010443 NA other downstream 2960738 68687257 ~ 68687962 (-)
G1013960 NA other upstream 311486 71996081 ~ 71996688 (-)
G1014411 NA other upstream 674690 72359285 ~ 72359505 (-)
G1014639 NA other upstream 762059 72446654 ~ 72449340 (-)
rnft2 rnft2 other upstream 2619055 74303648 ~ 74312488 (-)
G1017417 NA other upstream 3205804 74890399 ~ 74891140 (-)

Expression


Co-expression Network