XLOC_002897 (pimr150)


Basic Information

Item Value
gene id XLOC_002897
gene name pimr150
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34120543 ~ 34150672 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005349
AGTATAAAGCTTTTTGACGTAGCAGAAACTCTCATTAGCTTCTTTGGATGtctagtagttcagtactttctgcgATTCAACAGTACAGTGATACAATGGCATTTTCAAAACTGATTAACCGTCTGAAGAAAGCGTTTGATCAGCTATGTGTGCAGGAGATCCACGAACTTCACGCAGAGCCCATCAGTAGCTCTAAATTCTTCTGCACTGCTGTGAGCAACCTGGAGCTGGAAGTTCTCCAACCTCCAGCTCTTGATGCTCCAGCAGACGAAGATTTGGACTTTAAACCTGAAGTGAACAGCTTTGACTCTGCAGTGGTCATTGAGAACGACTCTGCAGAGCTTCACTTCCCAGAAGACATTGAATCCTCCCTCAGTGAGGACAGCCTGGAGCAAGAGCTTGATAGTCCTCCAAGTTCACCATCCGATGAGGACAATGAATCTCCAGTGAGCCAGCAGCTCATAACAGATGACATCTGTGACTCTGCCCTGGATGAAAACTCAAACCCTTTACCGGATCAGGTCTCACAAGAGGACTCTGCTGTGAAGTCTACAGCAGATGatgggacctgcttggacaataATGACATCAGCTGCCGCTACAAACTCGGAAAGCAGCTTGGTGAAGGAGGTTTCGGCTCCGTGTATGAGGGGATTCGCATACAGGATGGTCTGCAGGTGGCAGTTAAATTTGTCCAGAAGACCCCAAATATGCAAGATGTCAGCTCTtcatgtgaccaGCCACTTCCTTTAGAGATCACCTTGGCAAACATGGCCAGCGGTGGCTCCAGGTGTCCGAATATTATTCAGCTCCTGGACTGGCAGATCTTTGAAAACCATTACGTCATGGTGATGGAGCGGCCTAGTCCAAGCATGGACCTGGAGGCATTCCTTGAAGTCAGCGGAGGAGTCCTCAGTGAGAAAACAGCACATACCATCATGAGGCAAGCTGTTTATGCGGCCAACGTGTGCTGTTACCGCGGGGTGTTCCACCGGGACATTAAGCTTCAAAACCTGCTGGTGAACCCCGACACACTGGAAGTCAAGCTGATCGACTTCGGGTGTGGAGACTTCATGATGGAATCAGCCTACAGTATCTTCTCTGGCACAGAAGCGTACATCCCGCCAGAGTTTTATGAAAAAGGATGCTACCGGGCCAAACCAGCGACGGTCTATTCTCTTGGGGTTCTTCTGTTCACAATGCTCCATGGAGAATTCCCATCAGCGTATGACCTGTACTACCTCCAACATGACTGgtccaaatttaccctctctcaagAATGCTGTGATATGATGAGGGCTTGTCTGCATGAGAATCCAGAGTGCAGAATTCCTCTAGAAGAGATGCCTTACCACGACTGGTCCATGCTGGAGTTCTGAGTCACATTAGCagaatgttttgtatatttgatttttctacatgtctgtaataaagatatattttattgAA
>TCONS_00005350
ATGGCATTTTCAAAACTGATTAACCGTCTGAAGAAAGCGTTTGGTGTTAAGTGTGCGAACGAACAACCGTGTGAGCCACTCGAACCCACCGGCAGCACGACAGAGAATCACCGTCATCTGATGACCGATGACCCGGCCGTCGCTGCAGGAAAACAGGCAGGGAGACAGAAAAAGAGGAAACTCAAATTGTCTCCCATCTTCTTCACCTGTTTTTCCAGAAGAAGAGCTACTGTTGTTGATCAGCTATGTGTGCAGGAGATCCACGAACTTCACGCAGAGCCCATCAGTAGCTCTAAATTCTTCTGCACTGCTGTGAGCAACCTGGAGCTGGAAGTTCTCCAACCTCCAGCTCTTGATGCTCCAGCAGACGAAGATTTGGACTTTAAACCTGAAGTGAACAGCTTTGACTCTGCAGTGGTCATTGAGAACGACTCTGCAGAGCTTCACTTCCCAGAAGACATTGAATCCTCCCTCAGTGAGGACAGCCTGGAGCAAGAGCTTGATAGTCCTCCAAGTTCACCATCCGATGAGGACAATGAATCTCCAGTGAGCCAGCAGCTCATAACAGATGACATCTGTGACTCTGCCCTGGATGAAAACTCAAACCCTTTACCGGATCAGGTCTCACAAGAGGACTCTGCTGTGAAGTCTACAGCAGATGatgggacctgcttggacaataATGACATCAGCTGCCGCTACAAACTCGGAAAGCAGCTTGGTGAAGGAGGTTTCGGCTCCGTGTATGAGGGGATTCGCATACAGGATGGTCTGCAGGTGGCAGTTAAATTTGTCCAGAAGACCCCAAATATGCAAGATGTCAGCTCTtcatgtgaccaGCCACTTCCTTTAGAGATCACCTTGGCAAACATGGCCAGCGGTGGCTCCAGGTGTCCGAATATTATTCAGCTCCTGGACTGGCAGATCTTTGAAAACCATTACGTCATGGTGATGGAGCGGCCTAGTCCAAGCATGGACCTGGAGGCATTCCTTGAAGTCAGCGGAGGAGTCCTCAGTGAGAAAACAGCACATACCATCATGAGGCAAGCTGTTTATGCGGCCAACGTGTGCTGTTACCGCGGGGTGTTCCACCGGGACATTAAGCTTCAAAACCTGCTGGTGAACCCCGACACACTGGAAGTCAAGCTGATCGACTTCGGGTGTGGAGACTTCATGATGGAATCAGCCTACAGTATCTTCTCTGGCACAGAAGCGTACATCCCGCCAGAGTTTTATGAAAAAGGATGCTACCGGGCCAAACCAGCGACGGTCTATTCTCTTGGGGTTCTTCTGTTCACAATGCTCCATGGAGAATTCCCATCAGCGTATGACCTGTACTACCTCCAACATGACTGgtccaaatttaccctctctcaagAATGCTGTGATATGATGAGGGCTTGTCTGCATGAGAATCCAGAGTGCAGAATTCCTCTAGAAGAGATGCCTTACCACGACTGGTCCATGCTGGAGTTCTGAGTCACATTAGCagaatgttttgtatatttgatttttctacatgtctgtaataaagatatattttattgAA
>TCONS_00005351
AGTATAAAGCTTTTTGACGTAGCAGAAACTCTCATTAGCTTCTTTGGATGtctagtagttcagtactttctgcgATTCAACAGTACAGTGATACAATGGCATTTTCAAAACTGATTAACCGTCTGAAGAAAGCGTTTGGTGTTAAGTGTGCGAACGAACAACCGTGTGAGCCACTCGAACCCACCGGCAGCACGACAGAGAATCACCGTCATCTGATGACCGATGACCCGGCCGTCGCTGCAGGAAAACAGGCAGGGAGACAGAAAAAGAGGAAACTCAAATTGTCTCCCATCTTCTTCGCCTGTTTTTCCAGAAGAAGAGCTACTGTTGTTGATCAGCTATGTGTGCAGGAGATCCACGAACTTCACGCAGAGCCCATCAGTAGCTCTAAATTCTTCTGCACTGCTGTGAGCAACCTGGAGCTGGAAGTTCTCCAACCTCCAGCTCTTGATGCTCCAGCAGACGAAGATTTGGACTTTAAACCTGAAGTGAACAGCTTTGACTCTGCAGTGGTCATTGAGAACGACTCTGCAGAGCTTCACTTCCCAGAAGACATTGAATCCTCCCTCAGTGAGGACAGCCTGGAGCAAGAGCTTGATAGTCCTCCAAGTTCACCATCCGATGAGGACAATGAATCTCCAGTGAGCCAGCAGCTCATAACAGATGACATCTGTGACTCTGCCCTGGATGAAAACTCAAACCCTTTACCGGATCAGGTCTCACAAGAGGACTCTGCTGTGAAGTCTACAGCAGATGatgggacctgcttggacaataATGACATCAGCTGCCGCTACAAACTCGGAAAGCAGCTTGGTGAAGGAGGTTTCGGCTCCGTGTATGAGGGGATTCGCATACAGGATGGTCTGCAGGTGGCAGTTAAATTTGTCCAGAAGACCCCAAATATGCAAGATGTCAGCTCTtcatgtgaccaGCCACTTCCTTTAGAGATCACCTTGGCAAACATGGCCAGCGGTGGCTCCAGGTGTCCGAATATTATTCAGCTCCTGGACTGGCAGATCTTTGAAAACCATTACGTCATGGTGATGGAGCGGCCTAGTCCAAGCATGGACCTGGAGGCATTCCTTGAAGTCAGCGGAGGAGTCCTCAGTGAGAAAACAGCACATACCATCATGAGGCAAGCTGTTTATGCGGCCAACGTGTGCTGTTACCGCGGGGTGTTCCACCGGGACATTAAGCTTCAAAACCTGCTGGTGAACCCCGACACACTGGAAGTCAAGCTGATCGACTTCGGGTGTGGAGACTTCATGATGGAATCAGCCTACAGTATCTTCTCTGGCACAGAAGCGTACATCCCGCCAGAGTTTTATGAAAAAGGATGCTACCGGGCCAAACCAGCGACGGTCTATTCTCTTGGGGTTCTTCTGTTCACAATGCTCCATGGAGAATTCCCATCAGCGTATGACCTGTACTACCTCCAACATGACTGgtccaaatttaccctctctcaagAATGCTGTGATATGATGAGGGCTTGTCTGCATGAGAATCCAGAGTGCAGAATTCCTCTAGAAGAGATGCCTTACCACGACTGGTCCATGCTGGAGTTCTGAGTCACATTAGCagaatgttttgtatatttgatttttctacatgtctgtaataaagatatattttattg
>TCONS_00005352
AGTATAAAGCTTTTTGACGTAGCAGAAACTCTCATTAGCTTCTTTGGATGtctagtagttcagtactttctgcgATTCAACAGTACAGTGATACAATGGCATTTTCAAAACTGATTAACCGTCTGAAGAAAGCGTTTGGTGTTAAGTGTGCGAACGAACAACCGTGTGAGCCACTCGAACCCACCGGCAGCACGACAGAGAATCACCGTCATCTGATGACCGATGACCCGGCCGTCGCTGCAGGAAAACAGGCAGGGAGACAGAAAAAGAGGAAACTCAAATTGTCTCCCATCTTCTTCACCTGTTTTTCCAGAAGAAGAGCTACTGTTGTTGATCAGCTATGTGTGCAGGAGATCCATGAACTTCACGCAGAGCCCATCAGTAGCTCTAAATTCTTCTGCACTGCTGTGAGCAACCTGGAGCTGGAAGTTCTCCAACCTCCAGCTCTTGATGCTCCAGCAGACGAAGATTTGGACTTTAAGCCGGAAGTGAACAGCTTTGACTCTGCAGTGGTCATTGAGAACGACTCTGCAGAGCTTCACTTCACAGAAGACATTGAATCCTCCCTCAGTGAGGACAGCCTGGGGCAAGAGCTTGATAGTCCTCCAAGTTCACCATCCGATGAGGACAATGAATCTCCAGTGAGCCAGCAGCTCATAACAGATGACATCTGTGACTCTGCCCTGGATGAAAACTGGAACCCTTTACCGGATCAGGTCTCACAAGAGGACTCTGCTGTGAAGTCTACAGCAGATGatgggacctgcttggacaataATGACATCAGCTGCCGCTACAAACTCGGAAAGCAGCTTGGTGAAGGAGGTTTCGGCTCCGTGTATGAGGGGATTCGCATACAGGATGGTCTGCAGGTGGCAGTTAAATTTGTCCAGAAGACCCCAAATATGCAAGATGTCAGCTCTtcatgtgaccaGCCATTTCCTCTAGAGATCACCTTGGCAAACATGGCCAGCGGTGGCTCCAGGTGTTCGAACATTATTCAGCTTCTGGACTGGCAGATCTTTAAAAACCATTACGTCATGGTGATGGAGCGGCCTAGTCCAAGCATGGACCTGGAGGCATTCCTTGAAGTCAGCGGAGGAGTCCTCAGTGAGAAAACAGCACATACCATCATGAGGCAAGCTGTTTATGCGGCCAACGTGTGCTGTTACCGCGGGGTGTTCCACCGGGACATTAAGCTTCAAAACCTGCTGGTGAACCCCGACACACTGGAAGTCAAGCTGATCGACTTCGGGTGTGGAGACTTCATGATGGAATCAGCCTACAGTATCTTCTCTGGCACAGAAGCGTACATCCCGCCAGAGTTTTATGAAAAAGGATGCTACCGGGCCAAACCAGCGACGGTCTATTCTCTTGGGGTTCTTCTGTTCACAATGCTCCATGGAGAATTCCCATCAGCGTATGACCTGTACTACCTCCAACATGACTGgtccaaatttaccctctctcaagAATGCTGTGATATGATGAGGGCTTGTCTGCATGAGAATCCAGAGTGCAGAATTCCTCTAGAAGAGATGCCTTACCACGACTGGTCCATGCTGGAGTTCTGAGTCACATTAGCagaatgttttgtatatttgatttttgtacatgtctttaataaagatatattttattaaa

Function

symbol description
pimr150 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation.

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141212-86 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation.
ZDB-GENE-141211-53 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in negative regulation of apoptotic process; protein autophosphorylation; and regulation of mitotic cell cycle. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000092589 ENSDARG00000112207

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005349 False 1449 mRNA 0.47 7 34120543 34123733
TCONS_00005350 False 1549 mRNA 0.49 7 34120543 34150577
TCONS_00005351 False 1642 mRNA 0.48 7 34120545 34123733
TCONS_00005352 True 1644 mRNA 0.48 7 34147484 34150672

Neighbor

gene id symbol gene type direction distance location
XLOC_002896 pimr144 coding downstream 12624 34086591 ~ 34107919 (-)
XLOC_002895 BX548044.8 coding downstream 53257 34059007 ~ 34067286 (-)
XLOC_002894 pimr149 coding downstream 73786 34043561 ~ 34046757 (-)
XLOC_002893 rfc3 coding downstream 86863 34021368 ~ 34033680 (-)
XLOC_002892 zar1l coding downstream 118358 33999869 ~ 34002185 (-)
XLOC_002898 pimr145 coding upstream 21002 34171674 ~ 34223567 (-)
XLOC_002899 pimr148 coding upstream 36559 34187231 ~ 34200750 (-)
XLOC_002900 NA coding upstream 46110 34196782 ~ 34198566 (-)
XLOC_002901 pimr167 coding upstream 69820 34220492 ~ 34243269 (-)
XLOC_002902 BX510654.1 coding upstream 176590 34327262 ~ 34327394 (-)
XLOC_002891 BX569785.1 non-coding downstream 240179 33876131 ~ 33880364 (-)
XLOC_002890 NA non-coding downstream 455754 33663165 ~ 33664789 (-)
XLOC_002885 dre-mir-130a non-coding downstream 743329 33377130 ~ 33377214 (-)
XLOC_002884 dre-mir-301a non-coding downstream 743457 33377001 ~ 33377086 (-)
XLOC_002883 dre-mir-454a non-coding downstream 743602 33376818 ~ 33376941 (-)
XLOC_002906 CT573139.2 non-coding upstream 800388 34951060 ~ 34959178 (-)
XLOC_002909 NA non-coding upstream 903609 35054281 ~ 35058444 (-)
XLOC_002912 BX465844.1 non-coding upstream 1009338 35160010 ~ 35164291 (-)

Expression


Co-expression Network