XLOC_028975 (si:ch211-229l10.4)


Basic Information

Item Value
gene id XLOC_028975
gene name si:ch211-229l10.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 38265870 ~ 38315895 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00056043
GGGTAAAGCACCATGGCAAATGTTAAACAGCTGCTCAAGAAATCACTGGATGAACTGGTAGAAGATACATTAAAGGACTTTCAGTGGCATTTAATGAATGACCATAGAGAGATTTCAAAAGCTGAAATGGAGAATGCAGACAGGCGAAATACCGTGGATAAGTTGGTGTCATGTTTTGGATCAGAAAGAGCTGTGAAGATCACAGTGGACACTCTGAGGAAACTAAACCAAAATCAATTGGCTGAAGATCTGGAGAATACACAGAAGCAAGGTGCAGCTTCAGAGACCTGTAAATCCCCTCctgttgattacacacacaccagCCATGAACTAAAGGAGAAGTTAAAGGAGGACTATAAGCAGATATTGATTGGTGATTCACAGACGGGTCACCAGAAGAAGCTGGATGATATTTACACTGATCTATATGTGGTGGAGAACGAGACTGGAGGAAGAGAGAATGACCATGAGGTGATACAGATAGAGTCAAAACACAACCAACAGACAGCCGAGGATAAACCAATCAAGTGTAATGACATGTTTAAAGTTCAGCCTGACACAGGTCAACAAAACAGAAGAGTCCTGACACTGGGGATCGCAGGAGTGGGAAAGACTGTCTCTGTCAACAAATTCATCCTTGACTGGGCTGAAGGAAAAGACAATCAGGAAATAGTCTTCATATTTCCACTGCCGTTCCGTAAACTGAatctgattaaagaaaaagagtaCAGTCTCATAGGTCTGCTTAACAAGTACTTCTTTAGCAGTGGAGGACTGAGCTCTCTTCCTGAAAAACAAGGCAAGGtcatgttcatctttgatggactGGATGAATATCGCTTTGAATTGAACTTTAAAGAGGAGGATGGATTTACAGATGCTGATAAGGAAATGACAGTGAGTAAGATAGTAACACATCTCTTAAAGAGAGAGCTTGTGCCCTCTTCCCTCATCTGGATCacatccagaccagcagcagccagtCTGATACCCCAAATCTACATTGATCAGGTGACTGAGGTGCGAGGATTCAGTGATGAGCAGAAGGAGCAGTACTTCATCAAAAACAGCAGTGCTGAGATTGCTGGAAACATCATCAGTCACATCAGGAAATCCAGGAGTCTgtacatcatgtgccacatccccgtcttctgctggatctctctcactgttcttcagcctctgctgggtcaagaGAGCAATGAAGAAACACCCACAACTCTCACAGGGATGTACAGCAGCTACTTACTGTCTCAAAAGCAGCAGATGAAAGAAAAATACAGCAACGATTCTGAACCTGAAGCCTATGCCTGGTCTTTTGAAGACATTGTTCTGAagctggggaaactggcctttgAACAGCTGCAGGAAGGAAATCTGATTTTCTACAAAACAGATCTGGAGAAGTGTGGGCTGGATGTCAAGGAAGGGTCTGTGTTCTCTGGGTTATGTACTCGAATGTTTCAGGAGGAAAACCCCATCTCAGGGGAACAGGTGTACAGTTTTGTTCATCTCAGCGTTCAGGAGTTCATCGCTGCTCTCTATgtgtttttcacttacaaagacaAGAAAGCAAATCCATTTCTTGATTGCAGGAAAAAGGAACTAACATGGAAACTCTCTACAAAGAACCTGTTTAAACTTCACAAGGATGCAGTCAAGAAGACTTTGCAAAGCAAGAATGGACACCTGGACCTTTTCCTCCGCTTCCTGCTGGGtctctcactggagtccaatcagagtgACCTGAAGGAGCTTCTGCCAGAACTGAAGCTCAAAACTGAGAACATCAAAGACACGACAGactatatcaaaaagaaaatagaGAAGGAGAAATCAGCAGAGAGGACCATCAACCTCTtccactgtctgaatgaactgaaggaTGACTTTGTGGAGGACCTCCAGAAGAGTCTGAGCTCTGGAAatctcacatcacaggatctgtcCTCTGCTCAGTGGTCGGGTCTGGTGTTTGTGCTCCTGATGTCAGAAGAGACTCAAGAgaagtttgaactgcagaagtaCAGAAGATCTGATGAAGCACTGATGAGACTAATGCCAGTGGTTAGAAACACCAGAAGAGCACTCCTTcagagctgtaatctcactgttgagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtatcaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaacactgtaaactggagacactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctataATCATCCAGGAGATTTAGGAGTcgagctgctctctgaacaactggaggatccaaactacacactggacaaactcaatctggatcatggaggagagaagaggattacagcaggactgcacaaatatgtctgtttcctcactctggatccaaacacagcacacactcaactcattctgtctgaggagaacagagaggtgaagaatGTGgaggagaatcagccgtatcctgatcatccagacagatttgatgatcatcttcaggtgttgtgcagagagagtgtgtgtggacgctgttactgggagattgactggagtggagatgattaTGTgcgtatatcagtgtcatataagagcatcaggaggaagggaggaggtgcTGAGTGTGAGTTTGGAtctaatgctcagtcctggagtttgagatgctcttcctccagtttctcattcatgcacaatgacacacacactgatctcccagtggagccgctcagcaggagaataggagtgtttgtggatcacagtgcaggaactctgatcttctacaacatctatagagacacaatgagcctcatccactcagtccagaccacattcactgagccgctctgccctgggttttGGCTTTATCCTgaatcatcagtgaaactgagctgaagactgacgagagatttacccagaatcctctgcaggagcagtcagcagcagcagcagtgagtgtgtgtgtgtgtgtgcgcgtgcatttgtgtgtgcatctgtgtctgtgtgtgtgtgtgagagagtctatttgtatgtgcatgcatgtttgtgtgtgtgtgagtctgtatttgtgtgtgcacaCATGCTTGTTTGTGAGAGAgagtgcgtgcatgcgtgcgtgcgtgcatgtgtgtgtgtctgtgtgtgtccgtgtgtgtgtgtgagaaagtctgtttgtgtgtgtgtgcgtgtttgcgtgcatgtgtgtgtgtgcttgtgtgtgtgtgtgtgtgcgcgtgtgtgtgtgtgtgtgcgcgtgcttttgtgcgtgtgtgtaagtgtgagtgtgtgtgtgagagagttagtgcgtgtgtgtgttcactgttatgtgtgtgtgtgtgtgtgttcactgttatgtgcgtgcgtgtgtgtgtgtgtgtgtattcactgttatgtgtgtgtgcgtgtgtttgagagagtgcgtttgtaggtgtgtgtgagagcaaaagcgtgtgtctgtgtgtgtgtgtgcgtgcgtgtatgtgtgtgtgcgtttatgtgtgtgtgtgtgtgcgtgtgtattcactgttatgtgtgtgtgcgtatgcgtgtgtgtgtgtttgagagagtgcgtttgtaggtgtgtgtgagagcgaaagcgtgtgtgtgcgcgtgcgtgtgtgtgtgtgcgcgtgtgtgtgtctcagtcttcatcagtgtcatcattgatgttgatgaagtgtcctccaggatgctgctgtgttcagatcagctcattcttgtctacagattgatcttcttcattgtttctccgttgtttgagcacaaataataaaagtcaatgtcaaatccactgctgatattagaatgtgatgatgaacatggaaatgtctgaatcctgtctgaatctctgtcaaatcttgaatcaactgtagagaaatccagcagctcaatgaataaaggagaaatgaagtgtgacatttgtttctgctcttctgatcttcttcttcttcatgatttgacttgaactgaacaataaaaacacatttattccagtatttattgatctgttcatgttagttgatgacagtaaagttgttctctgttagttcttgttgactctcagtgcattaactgatgttcaccagcacaactgtgcattaataatgcttcagtaaatgtCTGATCACTCTCATTCATCAGGAGTCAGTAACTAGGATTCATAAATGCTCTACAAGATTCATTCACTGTTCTGAATTAACATTAACGACAGCTTAATGTAGAGTTTGATCATCATAAGACACACAAATACACCAACAGTAGAGTTAAATCTCCATCACATGTTGAGTTTTCTCCATCACTAACACACACTTGATGACACTATTACTTTCAGATTCTGATGAGTGTTTCAGCAGTTTTTCTTCTATAaccaagaccacac
>TCONS_00056044
CATCGCTGCTCTCTATgtgtttttcacttacaaagacaAGAAAGCAAATCTATTTCTTGATTCCAGGAAAAAGGAACTGACATGGCAACTCTCTACAAAGACCCTGTTTAAACTTCATAAGGCTGCAGTCAAGAAGACTTTACAAAGCAAGAATGGACACCTGGACTTTTTCCTCCGCTTCCTGCTGGGTCTCTCTCTGGAGTCTAATCAGAGTGTTCTGAAGAAGTTCCTGCCAGAACTGAAGCTCGAAACTGAGAACATCAAAGACACGACTGACTATATCAAAGAGAAAATAGAGGAGGAGAAATCAGCAGAGAGGACCATCAACCTCTtccactgtctgaatgaactgaaggaTGACTTTGTGGAGGACCTCCAGAAGAGTCTGAGCTCTGGAAatctcacatcacaggatctgtcCTCTGCTCAGTGGTCGGGTCTTGTGTTTGTGCTCCTGATGTCAGAAGAGACTCAAGAGAAGTTTGAACTGCAGAAATACAGAAGATCTGATGAAGCACTGATGAGACTGATGCCAGTGGTCAAGAACACCAGAAGAGCACTCCTTcagagctgtaatctcactgttgagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtatcaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaacactgtaaactggagacactgagattggtcatgtataatctcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaacactgtaaactggacacactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctataATCATCCAGGAGATTTAGGAGTcgagctgctctctgaacaactggaggatccaaactacacactggacaaactcaatctggatcatggaggagagaagaggattacagcaggactgcacaaatatgtctgtttcctcactctggatccaaacacagcacacactcaactcattctgtctgaggagaacagagaggtgaagaatGTGgaggagaatcagccgtatcctgatcatccagacagatttgatgatcatcttcaggtgttgtgcagagagagtgtgtgtggacgctgttactgggagattgactggagtggagatgattaTGTgcgtatatcagtgtcatataagagcatcaggaggaagggaggaggtgcTGAGTGTGAGTTTGGAtctaatgctcagtcctggagtttgagatgctcttcctccagtttctcattcatgcacaatgacacacacactgatctcccagtggagccgctcagcaggagaataggagtgtttgtggatcacagtgcaggaactctgatcttctacaacatctatagagacacaatgagcctcatccactcagtccagaccacattcactgagccgctctgccctgggttttGGCTTTATCCTgaatcatcagtgaaactgagctgaagactgacgagagatttacccagaatcctctgcaggagcagtcagcagcagcagcagtgagtgtgtgtgtgt
>TCONS_00056045
AAGAGTTTTCAGATGTGTTGTTCAGCTCAACAGTTCAGCGGAggaacaggaagatctgcaggcaTTATTTGAGTTGTGAGTGGGTAAAGCACCATGGCAAATGTTAAACAGCTGCTCAAGAAATCACTGGATGAACTGGTAGAAGATACATTAAAGGACTTTCAGTGGCATTTAATGAATGACCATAGAGAGATTTCAAAAGCTGAAATGGAGAATGCAGACAGGCGAAATACCGTGGATAAGTTGGTGTCATGTTTTGGATCAGAAAGAGCTGTGAAGATCACAGTGGACACTCTGAGGAAACTAAACCAAAATCAATTGGCTGAAGATCTGGAGAATACACAGAAGCAAGGTGCAGCTTCAGAGACCTGTAAATCCCCTCctgttgattacacacacaccagCCATGAACTAAAGGAGAAGTTAAAGGAGGACTATAAGCAGATATTGATTGGTGATTCACAGACGGGTCACCAGAAGAAGCTGGATGATATTTACACTGATCTATATGTGGTGGAGAACGAGACTGGAGGAAGAGAGAATGACCATGAGGTGATACAGATAGAGTCAAAACACAACCAACAGACAGCCGAGGATAAACCAATCAAGTGTAATGACATGTTTAAAGTTCAGCCTGACACAGGTCAACAAAACAGAAGAGTCCTGACACTGGGGATCGCAGGAGTGGGAAAGACTGTCTCTGTCAACAAATTCATCCTTGACTGGGCTGAAGGAAAAGACAATCAGGAAATAGTCTTCATATTTCCACTGCCGTTCCGTAAACTGAatctgattaaagaaaaagagtaCAGTCTCATAGGTCTGCTTAACAAGTACTTCTTTAGCAGTGGAGGACTGAGCTCTCTTCCTGAAAAACAAGGCAAGGtcatgttcatctttgatggactGGATGAATATCGCTTTGAATTGAACTTTAAAGAGGAGGATGGATTTACAGATGCTGATAAGGAAATGACAGTGAGTAAGATAGTAACACATCTCTTAAAGAGAGAGCTTGTGCCCTCTTCCCTCATCTGGATCacatccagaccagcagcagccagtCTGATACCCCAAATCTACATTGATCAGGTGACTGAGGTGCGAGGATTCAGTGATGAGCAGAAGGAGCAGTACTTCATCAAAAACAGCAGTGCTGAGATTGCTGGAAACATCATCAGTCACATCAGGAAATCCAGGAGTCTgtacatcatgtgccacatccccgtcttctgctggatctctctcactgttcttcagcctctgctgggtcaagaGAGCAATGAAGAAACACCCACAACTCTCACAGGGATGTACAGCAGCTACTTACTGTCTCAAAAGCAGCAGATGAAAGAAAAATACAGCAACGATTCTGAACCTGAAGCCTATGCCTGGTCTTTTGAAGACATTGTTCTGAagctggggaaactggcctttgAACAGCTGCAGGAAGGAAATCTGATTTTCTACAAAACAGATCTGGAGAAGTGTGGGCTGGATGTCAAGGAAGGGTCTGTGTTCTCTGGGTTATGTACTCGAATGTTTCAGGAGGAAAACCCCATCTCAGGGGAACAGGTGTACAGTTTTGTTCATCTCAGCGTTCAGGAGTTCATCGCTGCTCTCTATgtgtttttcacttacaaagacaAGAAAGCAAATCCATTTCTTGATTGCAGGAAAAAGGAACTAACATGGAAACTCTCTACAAAGAACCTGTTTAAACTTCACAAGGATGCAGTCAAGAAGACTTTGCAAAGCAAGAATGGACACCTGGACCTTTTCCTCCGCTTCCTGCTGGGtctctcactggagtccaatcagagtgACCTGAAGGAGCTTCTGCCAGAACTGAAGCTCAAAACTGAGAACATCAAAGACACGACAGactatatcaaaaagaaaatagaGAAGGAGAAATCAGCAGAGAGGACCATCAACCTCTtccactgtctgaatgaactgaaggaTGACTTTGTGGAGGACCTCCAGAAGAGTCTGAGCTCTGGAAatctcacatcacaggatctgtcCTCTGCTCAGTGGTCGGGTCTGGTGTTTGTGCTCCTGATGTCAGAAGAGACTCAAGAgaagtttgaactgcagaagtaCAGAAGATCTGATGAAGCACTGATGAGACTAATGCCAGTGGTTAGAAACACCAGAAGAGCACTCCTTCAGagctgtaaactcactgttcagtgttgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggacacactgagGCTACAGagctgtaaactcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaacactgtaaactggacacactgagattgatgacatgtaaactcactgccgattcttgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggacacactgagattggccatgtgtaatctcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtatcaatgacctccaggattcaggagtgaagaagttctctgatggactgaagactgtgaactgtaaactggacacattGAGtctggatcatggaggagagaagaggattacagcaggactgcacaaatatgtctgtttcctcactctggatccaaacacagcagacactcgactcattctgtctgaggagaacagagaggtgaagagtgtgagagagaatcagccgtatcctgatcatccagacagatttgatgatcatcttcaggtgttgtgcagagagagtgtgtgtggacgctgttactgggagattgactggagtggagatgattaTGTgcgtatatcagtgtcatataagagcatcaggaggaagggaggaggtgcTGAGTGTGAGTTTGGAtctaatgctcagtcctggagtttgagatgctcttcctccagtttctcattcatgcacaatgacacacacactgatctcccagtggagccgctcagcaggagaataggagtgtttgtggatcacagtgcaggaactctgatcttctacaacatctatagagacacaatgagcctcatccactcagtccagaccacattcactgagccgctctgccctgggttttGGCTTTATCCTgaatcatcagtgaaactgagctgaagactgacgagagatttacccagaatcctctgcaggagcagtcagcagc

Function

symbol description
si:ch211-229l10.4 Predicted to be involved in intracellular signal transduction.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000098357 ENSDARG00000102273

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00056043 False 4495 mRNA 0.44 6 38265870 38308760
TCONS_00056044 False 1729 mRNA 0.46 6 38267281 38281909
TCONS_00056045 True 3490 mRNA 0.45 9 38287350 38315895

Neighbor

gene id symbol gene type direction distance location
XLOC_028974 znf1093 coding downstream 5872 38254699 ~ 38259998 (-)
XLOC_028973 CR381657.4 coding downstream 28166 38237604 ~ 38237704 (-)
XLOC_028972 CR381657.2 coding downstream 28680 38237117 ~ 38237190 (-)
XLOC_028971 CR381657.3 coding downstream 31604 38234160 ~ 38234266 (-)
XLOC_028970 CR381657.7 coding downstream 32131 38233633 ~ 38233739 (-)
XLOC_028976 si:ch211-209n20.3 coding upstream 19640 38335535 ~ 38539463 (-)
XLOC_028977 znf1092 coding upstream 94795 38410690 ~ 38421217 (-)
XLOC_028978 si:ch211-209n20.59 coding upstream 159682 38475577 ~ 38476901 (-)
XLOC_028979 BX324212.1 coding upstream 248669 38564564 ~ 38573606 (-)
XLOC_028980 BX324212.2 coding upstream 273658 38589553 ~ 38608436 (-)
XLOC_028969 CR381657.6 non-coding downstream 33718 38232079 ~ 38232152 (-)
XLOC_028983 NA non-coding upstream 597638 38913533 ~ 38916444 (-)
XLOC_028987 NA non-coding upstream 993890 39309785 ~ 39310683 (-)
XLOC_028988 CR352303.1 non-coding upstream 1041771 39357666 ~ 39357785 (-)
XLOC_028989 BX548067.3 non-coding upstream 1048143 39364038 ~ 39364215 (-)

Expression


Co-expression Network