XLOC_028981 (si:dkey-59l11.10)


Basic Information

Item Value
gene id XLOC_028981
gene name si:dkey-59l11.10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 38818194 ~ 38829098 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00056055
atatatatatatatatatatatatatatatatatatatgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataattgtttcctgaaagctctgctaatgtctgcattggtgttttagctgcagtatggcagaggagcgagtaaaggactctctctcagagaaacacagtgtgagatcaggatcatgtgtgtccagcgctgtgtctctgaagagtgacggGTCAATGGGTCTTCCACCAGTATTCAGTGAGAAATCACCATCATCTGCCCAAAGtgtggatagagatgatcagactggagacctgcagcaggattcactccaaccagaacatgatgaacttcagagagtcaaagagcagcacaaaaccagcatgaagaacaagtatgagagattatttgagggaatcaaccatggagagactcaaaccctccttaacagcatctacacacagctctacatcatagaaggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagaaaagagccagaacaaaaccctcacaacacactccagtctactgcaatgacatctttaaagcctcagctggagcaggacatgaggagaagatcaagaaggagaaagcccagatcaagactgttctcactaaaggcatcgctggaatcgggaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagaccatcaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcagagatcatcagtacagtcttcatagacttctgctggactttcatcctgaacttgaagatctggagcccaagatttatgagcagtgtagagttgtgttcatctttgatggtctggatgaaagcagaatcacactcaacttttcagatgaggagaaagtttgtgctgtgactgaatcttcatcagtggctgtgttgatgtggagcctcctgaaaggagatctgcttccctctgctctcatctggatcacctccagaccagcagcagcccatcagatcccctccagatacatcaagcgtctgacagagattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagcgacgagcatcaagccagcagaatcatctcccacatcagaagagcaagaagcctccagatcatgtgccacatacccgtcttctgctggatctcctccactgtgcttcagaagctcctggaagaagatgtgagtgcagaaatccctcaaactctgactgagatgtacatccacttcctgctgattcagatcaacatgaggaagcagaagtatgaagagagagatccagagaaactcctgcagtccaacagaggagtgatcctcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgaggaggacctgattgagagcggcatagacgtcgctgacgcctcagtgtattctgggatctgcactgagatcttcaaggaggaatctgtgattcatcagaggaaagtctacagcttcatccatctcagctttcaggagtttctggctgctttctttgtgttttactgccatttaacagagaacagagaacAGCTGAGGGGGATTTATGAGAGAGAATATTCAGATGATTATGACAGAGAATATTCAGATGATCAATATCTACAGTCCAGCTCTGAGAAGTCTCTGTATTTTCTGCTTAGTTTAGCAGTAGTTAAAGCTGTCaggagtagtaatggtcatctggatctgttcctgcggttcctgctgggcgtctcactggagtccaatcagagactcttccaggatctgctgacacacacagaggagagctCAGAGAACATCCGGAGAatcacacagtacattaaagaccAGATCAAGAGAGATAACGgtctctcagctgaaagatccatcaatctgttcctctgtctgctggaggtgaaagatcagactctggccagagagattcaggagtttgtgaaatcagacaaacactcagaggagtatctctctcctgctcactgctcaacaatctcctacatgattgagatgtcagaggagccgctggatgagttagactctaataaattcaacacatcagctgagggaagacggagactgacagcagctgtgagaaactgcagaagagctctactgCAGTGGTGTAATCTTACTgttgagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagttggacctgagtaacaatcacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaacactgtaaactggacacactgagattggccgcatgtaaactcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaacactgtaaactggacacactgagattggccgcatgtaatctcactgttgagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatcacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaacactgtaaactggacacactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaatctggatcatggaggacacacgaggattacagcaggaccacgcaaatatgtctgtttcctcactctggatccaaacacagcacacactcaactcattctgtctgaggagaacagagaggtgaagagtgtgagagagaatcagccgtatcctgatcatccacacagatttgatgTTCAtcgtcaggtgttgtgcagagagagtgtgtgtggacgctgttactgggagattgactggagtggagatgatcatgtgtgtatatcagtgtcatataagagcatcaggaggaagggacaTGAGTGTTTGTTTGGaaataatgctcagtcctggagtttgcgctgtgtttcctccagtttctcattcagTCACAATGACACagacactgatctcccagtgaaggcgctcagcaggagaataggagtgtttgtggatcacagtgcaggaactctgatcttctacaacatctatagagacacaatgagcctcatccactcagtccagaccacattcactgagccgctctgtgctgggtttaggctttatcctggatcatcagtgaaactgagctgaagactgacgagagatttacccagaatcctctgcgggagcagtcagcagcagtgtgtgtgtgtgtgtgcgcttgtgtgtgagagagtatgtgtgcttgattgtgtgcatgtgagagtgtctgtatttgtgtgtgtgtgtgtgtgatgcatgttgtctgtgtgtgtgtgtttgagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
>TCONS_00056056
atgaagaacaagtatgagagattatttgagggaatcaaccatggagagactcaaaccctccttaacagcatctacacacagctctacatcatagaaggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagaaaagagccagaacaaaaccctcacaacacactccagtctactgcaatgacatctttaaagcctcagctggagcaggacatgaggagaagatcaagaaggagaaagcccagatcaagactgttctcactaaaggcatcgctggaatcgggaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagaccatcaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcagagatcatcagtacagtcttcatagacttctgctggactttcatcctgaacttgaagatctggagcccaagatttatgagcagtgtagagttgtgttcatctttgatggtctggatgaaagcagaatcacactcaacttttcagatgaggagaaagtttgtgctgtgactgaatcttcatcagtggctgtgttgatgtggagcctcctgaaaggagatctgcttccctctgctctcatctggatcacctccagaccagcagcagcccatcagatcccctccagatacatcaagcgtctgacagagattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagcgacgagcatcaagccagcagaatcatctcccacatcagaagagcaagaagcctccagatcatgtgccacatacccgtcttctgctggatctcctccactgtgcttcagaagctcctggaagaagatgtgagtgcagaaatccctcaaactctgactgagatgtacatccacttcctgctgattcagatcaacatgaggaagcagaagtatgaagagagagatccagagaaactcctgcagtccaacagaggagtgatcctcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgaggaggacctgattgagagcggcatagacgtcgctgacgcctcagtgtattctgggatctgcactgagatcttcaaggaggaatctgtgattcatcagaggaaagtctacagcttcatccatctcagctttcaggagtttctggctgctttctttgtgttttactgccatttaacagagaacagagaacAGCTGAGGGGGATTTATGAGAGAGAATATTCAGATGATTATGACAGAGAATATTCAGATGATCAATATCTACAGTCCAGCTCTGAGAAGTCTCTGTATTTTCTGCTTAGTTTAGCAGTAGTTAAAGCTGTCaggagtagtaatggtcatctggatctgttcctgcggttcctgctgggcgtctcactggagtccaatcagagactcttccaggatctgctgacacacacagaggagagctCAGAGAACATCCGGAGAatcacacagtacattaaagaccAGATCAAGAGAGATAACGgtctctcagctgaaagatccatcaatctgttcctctgtctgctggaggtgaaagatcagactctggccagagagattcaggagtttgtgaaatcagacaaacactcagaggagtatctctctcctgctcactgctcaacaatctcctacatgattgagatgtcagaggagccgctggatgagttagactctaataaattcaacacatcagctgagggaagacggagactgacagcagctgtgagaaactgcagaagagctctactgCAGTGGTGTAATCTTACTgttgagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagttggacctgagtaacaatcacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaacactgtaaactggacacactgagattggccgcatgtaaactcactgttcagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaacactgtaaactggacacactgagattggccgcatgtaatctcactgttgagtgctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatcacctgcaggattcaggagtgaagaagctctctgatggactgaagagtcaacactgtaaactggacacactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaatctggatcatggaggacacacgaggattacagcaggaccacgcaaatatgtctgtttcctcactctggatccaaacacagcacacactcaactcattctgtctgaggagaacagagaggtgaagagtgtgagagagaatcagccgtatcctgatcatccacacagatttgatgTTCAtcgtcaggtgttgtgcagagagagtgtgtgtggacgctgttactgggagattgactggagtggagatgatcatgtgtgtatatcagtgtcatataagagcatcaggaggaagggacaTGAGTGTTTGTTTGGaaataatgctcagtcctggagtttgcgctgtgtttcctccagtttctcattcagTCACAATGACACagacactgatctcccagtgaaggcgctcagcaggagaataggagtgtttgtggatcacagtgcaggaactctgatcttctacaacatctatagagacacaatgagcctcatccactcagtccagaccacattcactgagccgctctgtgctgggtttaggctttatcctggatcatcagtgaaactgagctga
>TCONS_00056057
agattgtgttcctgctgcacaagagcgtctgtacttctgcatctgcagtatggcagaggagcgagtaaaggactctctctcagagaaacacagtgtgagatcaggatcatgtgtgtccagcgctgtgtctctgaagagtgacggGTCAATGGGTCTTCCACCAGTATTCAGTGAGAAATCACCATCATCTGCCCAAAGtgtggatagagatgatcagactggagacctgcagcaggattcactccaaccagaacatgatgaacttcagagagtcaaagagcagcacaaaaccagcatgaagaacaagtatgagagattatttgagggaatcaaccatggagagactcaaaccctccttaacagcatctacacacagctctacatcatagaaggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagaaaagagccagaacaaaaccctcacaacacactccagtctactgcaatgacatctttaaagcctcagctggagcaggacatgaggagaagatcaagaaggagaaagcccagatcaagactgttctcactaaaggcatcgctggaatcgggaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagaccatca

Function

symbol description
si:dkey-59l11.10 Predicted to be involved in intracellular signal transduction. Human ortholog(s) of this gene implicated in several diseases, including CINCA Syndrome; Muckle-Wells syndrome; autosomal dominant nonsyndromic deafness 34; familial cold autoinflammatory syndrome (multiple); and gestational trophoblastic neoplasm. Orthologous to several human genes including NLRP13 (NLR family pyrin domain containing 13); NLRP14 (NLR family pyrin domain containing 14); and NLRP2 (NLR family pyrin domain containing 2).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-120703-17 Predicted to be involved in intracellular signal transduction. Human ortholog(s) of this gene implicated in several diseases, including CINCA Syndrome; Muckle-Wells syndrome; autosomal dominant nonsyndromic deafness 34; familial cold autoinflammatory syndrome (multiple); and gestational trophoblastic neoplasm. Orthologous to several human genes including NLRP13 (NLR family pyrin domain containing 13); NLRP14 (NLR family pyrin domain containing 14); and NLRP2 (NLR family pyrin domain containing 2).

Ensembl:

ensembl_id ENSDARG00000034095

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00056055 False 3708 mRNA 0.46 9 38818194 38828508
TCONS_00056056 False 3087 mRNA 0.46 7 38818437 38826790
TCONS_00056057 True 645 mRNA 0.47 4 38826441 38829098

Neighbor

gene id symbol gene type direction distance location
XLOC_028980 BX324212.2 coding downstream 209758 38589553 ~ 38608436 (-)
XLOC_028979 BX324212.1 coding downstream 244588 38564564 ~ 38573606 (-)
XLOC_028976 si:ch211-209n20.3 coding downstream 278731 38335535 ~ 38539463 (-)
XLOC_028978 si:ch211-209n20.59 coding downstream 341293 38475577 ~ 38476901 (-)
XLOC_028977 znf1092 coding downstream 396977 38410690 ~ 38421217 (-)
XLOC_028982 znf1127 coding upstream 47669 38876767 ~ 38877924 (-)
XLOC_028983 NA coding upstream 84435 38913533 ~ 38916444 (-)
XLOC_028984 si:dkey-122c11.8 coding upstream 275948 39105046 ~ 39111612 (-)
XLOC_028985 si:ch211-22k7.9 coding upstream 328907 39158005 ~ 39186901 (-)
XLOC_028986 si:ch73-236c18.2 coding upstream 415303 39244401 ~ 39268051 (-)
XLOC_028973 CR381657.4 non-coding downstream 580490 38237604 ~ 38237704 (-)
XLOC_028972 CR381657.2 non-coding downstream 581004 38237117 ~ 38237190 (-)
XLOC_028971 CR381657.3 non-coding downstream 583928 38234160 ~ 38234266 (-)
XLOC_028970 CR381657.7 non-coding downstream 584455 38233633 ~ 38233739 (-)
XLOC_028987 NA non-coding upstream 480687 39309785 ~ 39310683 (-)
XLOC_028988 CR352303.1 non-coding upstream 528568 39357666 ~ 39357785 (-)
XLOC_028989 BX548067.3 non-coding upstream 534940 39364038 ~ 39364215 (-)
XLOC_028992 BX548067.1 non-coding upstream 622537 39451635 ~ 39469709 (-)

Expression


Co-expression Network