XLOC_028984 (si:dkey-122c11.8)


Basic Information

Item Value
gene id XLOC_028984
gene name si:dkey-122c11.8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 39105046 ~ 39111612 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00056059
cactgtgattcaactggagaaaggataaattgTCCAAAAGCAGAGGAAAATTtcctgctgaagtgactgatGTCCACACTGttgtaaagatggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagacCTGATGTTGCTGAAAGAAAAGACTCATCAACagaatgaaatggaagagaaacaGCAAGACATGACGACTGATGAAAAACCTACACTGACGAAAAAGACTTTGTCAcgtggaagacctcggaaatccaaacctaggtgtaatttcagctgtaaacaatgtggaaaaagtttcAGTCAGAAGCCAAAGCTTGATGTTCACATAAGAGATCACACTAGGGAGAAAGCTTATACttgcaaacagtgtggaaagagcttctaTAATACAAGAAACCtaacagtgcacatgagaattcacactggagaaaggccgtacacatgccaacagtgtgggaaAAGCTTCCATAAAACAGGAAACTTAACAGTGCActtgagaattcacactggagagaggccatacacatgccaacagtgtgggaaAAGCTTTCAAACTACAGGAAActtaacagtgcacatgagaattcacactggggagaagccttactcttgccctcagtgtggaaaaagTTATAGTCAAAATAGCAaccttgaagtccacatgagaactcacaatgGAGGAAGAACTTTTGTTTGCACACAGTGTGGTAAAagatttgttaaaaaacaaaatcttgacctccacatgaggattcacactggagagaaaccttacacatgcacagagtgtggtaaaagtttcccatataaaagcacactcaaacaccacatgatagttcacaccggagagaagccgtttgcatgtgcgcagtgtggaaagagcttcacatgtAATGCTAACCTCAggaaccacatgaatggtcacactggaaccatagtgttcacatgtgatctgtgtggaaagagtctcacacacAAATACTCCATAAAGAaccacatgaagactcactcaggAGAGCGTTTTATATGCAttgagtgtggaaagggctttaaacataaaagaagcctcagCAATCACATggagcttcacaatggagagcagagtcctcaaaattaaggccttgtccacacaaacatgaGTATATGCATAACAGCAGCCttttcatgtagtttggctgttAATTGAcgtgaggtttatttataaactactttcgagaggatcacatgcttatgattgtccacggcTGGTTCCACATTAAccaacacatgattcaccaatcagacgattcctaactcactataaataaccagagtttctaaCCTTAGTTATCTTTATCTTGAGGAATTCCcctcccacccctactcctcctcctttctagAATGGGCAACACAGCAGCCCAGTGATTAgtattgttgcctcacagaaagattGTCACAGCAAGAAGAGCCCTCATTGAACTGGTTGATATTTGTGGAGAGTTTGCttattctccccatgctcacatgggttttccTCAGTTTCCTTCCACAGCCCAAAAACACGTAacctaagtaaactgaacattctAAATTGGCACCGTAGTCAAGCTCTTAGAAGCCATATATCTCCCTTTAGCCATCTGGATATCTGTCATTAGAACAGAAACAAGTCgggggagttcatcaagatctacctgagctcataCTCCTCTCTCACCCTGCTTACGAGAGGTAGCCCGGGGCTGGAGGATGATTGTTACGGTCCGTGGGAGTTTGTATTTTTGTGCCTTCTCCCTCTCTGTTTTGCTTATCTCCCTTCGCTCTCTTCGCATCTCCTCGACTGTCATTCGCTCTTTGTCTCGCCCTATCACCTTTTGTTCCGCTACTTTTTCTCTACTAGGTACCTGCTGATTGGATCCCGAGCCTGTCACTCCTCATTAGGGCGTTTCCTCGTGGACCAATTGGATTTCGTTCCACGGACTTTAAATTCGACCGGCCCGCCTTGTTTTTCAGAgtgctatgtgtgtgcgtgttggtTTGTGTTCGCTTGCTGCTATTCATAATGTATGCTttgttctgtgtttctgaatAACTACATCGATGTAAATTAAGTCATGGTTAAATAGTTTATCATTCTTTTTTGGGGAAAAGGGAATAGTTTACTAAGCCACTTCACATACATTTTGCCCGTAGGTAACTTcaatgttcagaaacactaggtaagtgggtgagcgccacattttgtatttttgcttattatttcagGGAGTTTAGGTGTTGCTTCGCAAACGCTGAAGATTTTGGTTTCTTTTTCACAATTTGATTTTTATTAGTAAGTTTAGAGAGGGATCTTGTGTTCTAGTTTAGgtggcttttggttttgtttagttctttgctttggcgccactctagttcctttttcccctaaaacttttgattgtatttcttcttcttttcttcttcttcttcttattattatatatacattgtacAAAGCGCACACATGTAAGCCTCTCTTTTGTTGGCTTCATTTTTCTTCTCCTCataaaaggaataaatgaattgaatgtaAA
>TCONS_00056060
atggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagacCTGATGTTGCTGAAAGAAAAGACTCATCAACagaatgaaatggaagagaaacaGCAAGACATGACGACTGATGAAAAACCTACACTGACGAAAAAGACTTTGTCAcgtggaagacctcggaaatccaaacctaggtgtaatttcagctgtaaacaatgtggaaaaagtttcAGTCAGAAGCCAAAGCTTGATGTTCACATAAGAGATCACACTAGGGAGAAAGCTTATACttgcaaacagtgtggaaagagcttctaTAATACAAGAAACCtaacagtgcacatgagaattcacactggagaaaggccgtacacatgccaacagtgtgggaaAAGCTTCCATAAAACAGGAAACTTAACAGTGCActtgagaattcacactggagagaggccatacacatgccaacagtgtgggaaAAGCTTTCAAACTACAGGAAActtaacagtgcacatgagaattcacactggggagaagccttactcttgccctcagtgtggaaaaagTTATAGTCAAAATAGCAaccttgaagtccacatgagaactcacaatgGAGGAAGAACTTTTGTTTGCACACAGTGTGGTAAAagatttgttaaaaaacaaaatcttgacctccacatgaggattcacactggagagaaaccttacacatgcacagagtgtggtaaaagtttcccatataaaagcacactcaaacaccacatgatagttcacaccggagagaagccgtttgcatgtgcgcagtgtggaaagagcttcacatgtAATGCTAACCTCAggaaccacatgaatggtcacactggaaccatagtgttcacatgtgatctgtgtggaaagagtctcacacacAAATACTCCATAAAGAaccacatgaagactcactcaggAGAGCGTTTTATATGCAttgagtgtggaaagggctttaaacataaaagaagcctcagCAATCACATggagcttcacaatggagagcagagtcctcaaaattaa

Function

symbol description
si:dkey-122c11.8 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110913-23 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000115506

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00056059 False 2601 mRNA 0.41 3 39105046 39111612
TCONS_00056060 True 1077 mRNA 0.41 2 39106481 39110934

Neighbor

gene id symbol gene type direction distance location
XLOC_028983 NA coding downstream 188602 38913533 ~ 38916444 (-)
XLOC_028982 znf1127 coding downstream 227122 38876767 ~ 38877924 (-)
XLOC_028981 si:dkey-59l11.10 coding downstream 275948 38818194 ~ 38829098 (-)
XLOC_028980 BX324212.2 coding downstream 496610 38589553 ~ 38608436 (-)
XLOC_028979 BX324212.1 coding downstream 531440 38564564 ~ 38573606 (-)
XLOC_028985 si:ch211-22k7.9 coding upstream 46393 39158005 ~ 39186901 (-)
XLOC_028986 si:ch73-236c18.2 coding upstream 132789 39244401 ~ 39268051 (-)
XLOC_028987 NA coding upstream 198173 39309785 ~ 39310683 (-)
XLOC_028988 CR352303.1 coding upstream 246054 39357666 ~ 39357785 (-)
XLOC_028989 BX548067.3 coding upstream 252426 39364038 ~ 39364215 (-)
XLOC_028973 CR381657.4 non-coding downstream 867342 38237604 ~ 38237704 (-)
XLOC_028972 CR381657.2 non-coding downstream 867856 38237117 ~ 38237190 (-)
XLOC_028971 CR381657.3 non-coding downstream 870780 38234160 ~ 38234266 (-)
XLOC_028992 BX548067.1 non-coding upstream 340023 39451635 ~ 39469709 (-)
XLOC_028993 NA non-coding upstream 532012 39643624 ~ 39702186 (-)

Expression


Co-expression Network