XLOC_028986 (si:ch73-236c18.2)


Basic Information

Item Value
gene id XLOC_028986
gene name si:ch73-236c18.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 39244401 ~ 39268051 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00056066
TGAACATTAAGAGTGATACAAGTAATGCTTCTTTAACTTCACTAAACACTTAAACTTATCTAACACACATTCAGCTGCTATAGGAAGAGGCAACACAAGTGAAGAATAAAGGTTTAACCTTAGCTAATTGAGCTCATAGGAAattatgaatgaatgcagcagaTTATGATGCTtctattcctctggtgtgtttgtgtgttcagtgtgagatcaggatcatgtgtgtccagctatgtgtctctgaagagtgaccggtcTAAAGATGAACCACCATACTTCAGAGAGAAGACATCATCTGCCAAAAGtgtggatggagatgatcagactggagacctgcagcaggattcactccaaccagaacatgatgaactccagagagtcaaagagcagcacaaaaccagcatgaagaacaagtataagagattatttgagggaatccACCATCGAGAGACTCAAACCCTACTGAACaggatctacacacagctctacatcatagaaggagagagtgaaggagtgaatgaagaacatgaggtttcacacatggagaaaagagccagaacagaaccctcacaacacactccagtctactgcaatgacatctttaaagcctcagctgaagcaggacatgaggagaagatcaagaaggaggaaacccagatcaagactgttctcactaaaggtatcgctggaatcgggaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagaccatcaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcagagatcatcagtacagtcttcacacacttctgctggactttcatcctgaacttaaagatctggagcccaagatttatgagcagtgtagagttgtgttcatctttgatggtctggatgaaagcagaatcacactcaacttttcagatgaggagaaagtttgtgctgtgactgaatcttcatcagtggctgtgttgatgtggagcctcctgaaaggagatctgcttccctctgctctcatctggatcacctccagaccagcagcagcccatcagatcccctccagatacatcaatcgtctgacagaaattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagcgacgagcatcgagccagcagaatcatctcccacatcagaatagcaagaagcctccagataatgtgccacatacccgtcttctgctggatctcctccactgtgcttcagaagctcttggaagaagatgtgagtgcagaaatccctcaaactctgactgagatgtacattcacttcctgctgattcagatcaacatgaggaagcagaagtatgaagagagagatccagagaaactcctgcagtccaacagaggagtgatcctcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgagaaggacctgattgagagcggcatagacgtcactgacgcctcggtgtattctgggatctgcactgagatcttcaaggaagaatctgtgattcatcagaggaaagtctacagctttatccatctcagctttcaggagtttctggctgctttccATGTGTTTTACTACCATGTGACTATAACAATGAAGGAACTGAGGGATTATGTGTCAATAGAAGATGCACATAAACAAGCAGTGGATAAAGCTGTAGagagtagtaatggtcatctggacctgttcctgcggttcctgctgggcatctcactggagtccaatcagaaaCTCTTACAGGATCTTCTGCCACACACAGAGGAGAGCTCAGAGAGCATCAGGAGGAGCACACAGTACATTAAAAACAAGATCAAAGGAGATGACCGTCTCTCAGCTGacagatccatcaatctgttcctctgtctgctggaggtgaaagatcagactctggccagagagattcaggagtttgtgaaatcaggcaaacactcagaggagaaactctctcctgctcactgctcaacaatctcctacatgattgaaATGTCAGAGGAGCCGCTAGATGAGTTTGAGCTGCAGAAATTCAACGCTTCAGATGAGGGAAGACTGAGACTGGTACCAGCTGTGAAAAACTGCAGgagagctctactactGTCCTGTAAACTCACCACTCagtcctgtgagagtttgtcttcagctctacaatcctcaaacggtgtcctgagagagctggacctgagtaacaatgacctgcaggattcaggagtggagcttctctctgatggactgaagagtccagaCTGTAAATTGGAGATACTGAGGTACAATCAATTCCACCACATATTTTCACAATATAAATGTTACCATACTTAGTTGTAAATATTGTGTAATGCCACAAAGTATGATGAGATAAGAGAAACACATGTGCAGTACTGATTATTGTACTGTGCTTTAGAATATTATGCAAATTATTCCTTTCTCTGATTTCCTTTATTATTGGATGTAAATGAGTCAGTGTAAATGTCATCAGTCAT
>TCONS_00058272
ggcagaggagcgagtaaaggactctctctcagagaaacacaggtattgactctgtttttacaccattattttaacactttctcttaaaaacaaagaccaacaacaatgcacttatttgtgttgctattgcctgatcaaatgatggacaacgcttcagtttacagcttcagcaaatgtgtttagatcattctagaTTACAGACAGCTTTACCAGAGCTCAATATGTGTCAtgtgcagggccagacggaatctgcgggcgttttttgctatttctgtggagaattttggtaaaaaaatctgtggatttctgcggaatgatTTTTGGAGTATCATGACTAAAactttaatatgtgaaataaataatacctttaatacttttatttaatgtttaaaatgcaaatccaatatgATTCACTTTAtgtgttaaacaaagcaagtgtctcatataatatctctactaaaagactgaaaatatgactgttcaaactgcattgtgcataaatctgatgaaaattttcatattagtcaataatattactttaattaataaaaaaaaaactgaataaatacagatttacacacttttactcaagtaaataaacataattaatgatgggctaaaaatcggtggaattctgcgtgcacagattccgtgtgggcctagtcatgtgTCTGTTTACCCATGATATCTGTGTAGCAGACCTGATCAGATAGACTTTCAGCCAACAATTAGTTTGTGCTGAAATAAACTACACAAACTCATTAAACTCTTaaagtttgtcctgcagtttattcctctggtgtgtttgtgtgttcagtgtgagatcaggatcacgTGTGTGCAGCTCCGTGTCTCTAAAGAGTAACCGGTCTAAAGACAATCCACCAATCTTCAGAGAGAAAACACAATCATTTGCCAAAAggtatgaatgattttttttatcactTGTCAGTCAATCttctaaaatcacatttttttataacaataaataaagtaccacaaattcatttaaaaaaactattattatcacccttagaccagggatgggcaaacttgatcgtcgagggctggtgtccctgcagagttttgttccagcactagtcaaacacacctgaacaaactaatcagtgtcttcaagatcacttgaactctatagggaggtctgtttgaatagggttggagctaaactatgcaggacactggccctcctggatcaagtttgcccacccctgccttagacagtttgtaaggtaattaatatttaattttttatggtaATGCATTAGCCTAATGAAACTGATCTTACACCAAAACCCCCGTTAACCAGGTTTCCAACTATTTATAGACCTATTTAAGACCCTTTTAATATagactaatattaatataatgacaaatggcaCCAAAACTTCAATTGTTGCTTTATTAAactataaagaaatataaaataaaatacaagctaactttgttgttatttttagacaTCCAAAACGTGAACATTAATTTCTAGTGgcagatttagtttcttatgcAGAGAATCTTTcagtaaattataatatatatatacaacagttctgcctggttcttgaatctgattggctgatagccgtgtgaaattctgcaataacagcactggtccagcttcacccttctgtattactccgcccacatacagtaaCAAGCAGAGGACcatctacagtttgacaaatattcctgctgttatttagtggagaatgtagttgtttagattgcaacaatgcagtttatttataaggatagtgcctattttaaaatatttataatttctgacatAATTTCTAGTTCATAAGAAATAACCTTCTTGCAATACACAAGTGGCTCAGGTAGTGCAGCTCATCCTGGATGGCACTTCAATGTGAACTGTGGCAAGAATCATATCGATCCTACTATCAATTACGTTCTGCTGCCTGCAACATCCTCCAGCATGACTGGTGTGATGTGGGGTGGCATTTCTGATGCAGATGCAGTGTTCGCCAGAGGTAGCCTGACTACCATTAGGTACCGATATGAGATCCACAGACCCCTTGTAAGACCATATACCTATGCTGTCGGGCTCTTCCTAAAGCAAGACAACGCTAGACTTCATGTGGCTGGAGTGCTATCGGTTCTTGCAAGACTAAAGCATTGATTCTATGGACTGGCCCGCTTGTACCTGAGACCCTGAATCAAATTGAGCACATCTGGGACATCAAATCTCGTTCCATCCACCAAAGCCACATTGAACCACAGACTGTCCAGGATTTGGCAGATGCTTTAGTCCAGGTCTGGGAGGAGATCACTCAGGAGATCATCCACCACCTGATCAGGAGGATGCCCAGAAATTGTAGGCATGTGGAGGCCACGCACTCTACTGAGCCCCATTTTAACTTGTGTCAAGGACTCTGCATCAAAGTTAGATCAGCCTGTAGTGTGTTTTTCCTCTTCAATTTTGAGTGTGACGCCAAATCCAGAACTCCATGGGTTAATAAATCGGatttacattaataatttctATGTGATTTTGTTTTCTGCACATTCAGCtatgtaaagaacaaagtatttaataagaatagtTCATTCCTTCAGATTTAGGATATGTTATTTTAGTGAGCAGTGTATTACTGTAATGACAAATgacaaacttttttatttgtaaaactatagaacaaataaaacacacaggcttttttagttattatttttttgacatccaaaaattaaaattcggCATGATTAAGGACATTAATGAGCAAATAATGAACATTAAGAGTGATACAAGTAATGCTTCTTTAACTTCACTAAACACTTAAACTTATCTAACACACATTCAGCTGCTATAGGAAGAGGCAACACAAGTGAAGAATAAAGGTTTAACCTTAGCTAATTGAGCTCATAGGAAattatgaatgaatgcagcagaTTATGATGCTtctattcctctggtgtgtttgtgtgttcagtgtgagatcaggatcatgtgtgtccagctatgtgtctctgaagagtgaccggtcTAAAGATGAACCACCATACTTCAGAGAGAAGACATCATCTGCCA

Function

symbol description
si:ch73-236c18.2 Predicted to be involved in intracellular signal transduction.

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-2 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDARG00000112386

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00056066 False 2540 mRNA 0.44 3 39244401 39265279
TCONS_00058272 True 3073 lncRNA 0.37 1 39264979 39268051

Neighbor

gene id symbol gene type direction distance location
XLOC_028985 si:ch211-22k7.9 coding downstream 57500 39158005 ~ 39186901 (-)
XLOC_028984 si:dkey-122c11.8 coding downstream 132789 39105046 ~ 39111612 (-)
XLOC_028983 NA coding downstream 327957 38913533 ~ 38916444 (-)
XLOC_028982 znf1127 coding downstream 366477 38876767 ~ 38877924 (-)
XLOC_028981 si:dkey-59l11.10 coding downstream 415303 38818194 ~ 38829098 (-)
XLOC_028987 NA coding upstream 41734 39309785 ~ 39310683 (-)
XLOC_028988 CR352303.1 coding upstream 89615 39357666 ~ 39357785 (-)
XLOC_028989 BX548067.3 coding upstream 95987 39364038 ~ 39364215 (-)
XLOC_028990 si:dkey-156k2.4 coding upstream 104724 39372775 ~ 39487825 (-)
XLOC_028991 si:dkey-261o4.9 coding upstream 160551 39428602 ~ 39448829 (-)
XLOC_028979 BX324212.1 non-coding downstream 670795 38564564 ~ 38573606 (-)
XLOC_028973 CR381657.4 non-coding downstream 1006697 38237604 ~ 38237704 (-)
XLOC_028972 CR381657.2 non-coding downstream 1007211 38237117 ~ 38237190 (-)
XLOC_028971 CR381657.3 non-coding downstream 1010135 38234160 ~ 38234266 (-)
XLOC_028992 BX548067.1 non-coding upstream 183584 39451635 ~ 39469709 (-)
XLOC_028993 NA non-coding upstream 375573 39643624 ~ 39702186 (-)

Expression


Co-expression Network