XLOC_002899 (pimr148)


Basic Information

Item Value
gene id XLOC_002899
gene name pimr148
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34187231 ~ 34200750 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005355
AGTATAAAGCTTTTGACGTAGCAGAAACTCTCAGTAGCTTCTTTGGATGtctagtagttcagtactttctgcgATTCAACAGTACAGTGATAAAATGGCATTTTCAAAACTGATTAACCGTCTGAAGAAAGCGTTTGGTGTTAAGTGTGCGAACGAACAACCGTGTGAGCCACTCGAACCCACCGGCAGCACGACAGAGAATCACCGTCATCTGATGACCGATGACCCGGCCGTCGCTGCAGGAAAACAGGCAGGGagacagaaaaagaggaaaaTCAAATTGTCTTCCATCTTCTTCGCCTGTTTTTCCAGAAGAAGAGCTACTGTTGTCGATCAGCTATGTGTGCAGGAGATCCACGAACTTCACGCAGAGCCCATCAGTAGCTCTAAATTCTTCTGCACTGCTGTGAGCAACCTGGAGCTGGAAGTTCTCCAACCTCCAGCTCTTGATGCTCCAGCAGACGAAGATTTGGACTCTAAACCGGAAATGAACAGCTTTGACTCTGCAGTGGTCATTGAGAACGACTCTGCAGAGCTTCACTTCCCAGAAGACATTGAATCCTCCCTCAGTGAGGACAGCCTGGGGCAAGAGCTTGATAGTCCTCCAAGTTCACCATCCGATGAGGACAATGAACTTCCAGTGAGCCAGCAGTTCATAACAGATGACATCTGTGACTCTGCCCTGGATGAAAACTGGAACCCTTTACCGGATCAGGTCTCACAAGAGGACTCTGCTGTGAAGTCTACAGCAGATGatgggacctgcttggacaataATGACATCAGCTGCCGCTACAAACTCGGAAAGCAGCTTGGTGAAGGAGGTTTCGGCTCCGTGTATGAGGGGATTCGCATACAGGATGGTCTGCAGGTGGCAGTTAAATTTGTCCAGAAGACCCCAAATATGCAAGATGTCAGCTCTtcatgtgaccaGCCACTTCCTCTAGAGATCACCTTGGCAAACATGGCCAGCGGTGGCTCCAGGTGTTCGAACATTATTCAGCTTCTGGACTGGCAGGTCTTTGAAAACCATTACGTCATGGTGATGGAGCGGCCTAGTCCAAGCATGGACCTGGAGGCATTCCTTGAAGTCAGCGGAGGAGTCCTCAGTGAGAAAACAGCACATACCATCATGAGGCAAGCTGTTTATGCGGCCAACGTGTGCTGTTACCGCGGGGTGTTCCACCGGGACATTAAGCTTCAAAACCTGCTGGTGAACCCCGACACACTGGAAGTCAAGCTGATCGACTTCGGGTGTGGAGACTTCATGATGGAATCAGCCTACAGTATCTTCTCTGGCACAGAAGCGTACATCCCGCCAGAGTTTTATGAAAAAGGATGCTACCGGGCCAAACCAGCGACGGTCTATTCTCTTGGGGTTCTTCTGTTCACAATGCTCCATGGAGAATTCCCATCAGCGTATGACCTGTACTACCTCCAACATGACTGgtccaaatttaccctctctcaagAATGCTGTGATATGATGAGGGCTTGTCTGCATGAGAATCCAGAGTGCAGAATTCCTCTAGAAGAGATGCCTTACCACGACTGGTCCATGCTGGAGTTCTGAGTCACATTAGCagaatgttttgtatatttgatttttgtacatgtctgtaataaagatatattttattgAA

Function

symbol description
pimr148 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation.

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-141211-47 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation.

Ensembl:

ensembl_id ENSDARG00000095054

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005355 True 1643 mRNA 0.48 7 34187231 34200750

Neighbor

gene id symbol gene type direction distance location
XLOC_002897 pimr150 coding downstream 36559 34120543 ~ 34150672 (-)
XLOC_002896 pimr144 coding downstream 79312 34086591 ~ 34107919 (-)
XLOC_002895 BX548044.8 coding downstream 119945 34059007 ~ 34067286 (-)
XLOC_002894 pimr149 coding downstream 140474 34043561 ~ 34046757 (-)
XLOC_002893 rfc3 coding downstream 153551 34021368 ~ 34033680 (-)
XLOC_002901 pimr167 coding upstream 19742 34220492 ~ 34243269 (-)
XLOC_002902 BX510654.1 coding upstream 126512 34327262 ~ 34327394 (-)
XLOC_002903 dclk1a coding upstream 536572 34737322 ~ 34871737 (-)
XLOC_002904 ccdc169 coding upstream 671445 34872195 ~ 34889053 (-)
XLOC_002905 sparta coding upstream 688578 34889328 ~ 34916208 (-)
XLOC_002891 BX569785.1 non-coding downstream 306867 33876131 ~ 33880364 (-)
XLOC_002890 NA non-coding downstream 522442 33663165 ~ 33664789 (-)
XLOC_002885 dre-mir-130a non-coding downstream 810017 33377130 ~ 33377214 (-)
XLOC_002884 dre-mir-301a non-coding downstream 810145 33377001 ~ 33377086 (-)
XLOC_002883 dre-mir-454a non-coding downstream 810290 33376818 ~ 33376941 (-)
XLOC_002906 CT573139.2 non-coding upstream 750310 34951060 ~ 34959178 (-)
XLOC_002909 NA non-coding upstream 853531 35054281 ~ 35058444 (-)
XLOC_002912 BX465844.1 non-coding upstream 959260 35160010 ~ 35164291 (-)
XLOC_002917 NA non-coding upstream 1112142 35312892 ~ 35321637 (-)

Expression


Co-expression Network