XLOC_028990 (si:dkey-156k2.4)


Basic Information

Item Value
gene id XLOC_028990
gene name si:dkey-156k2.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 39372775 ~ 39487825 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00056069
GTTGATGTGAGATCGCACTTTAGTgcattttgtatgtttgtgattgaactgtgtatattaaatactgcaaaatggatctctccgtgtcagtctcctcgttacattAATAAAGAGTTGGGCTATTGGAACATCTGAAGCAAgccatttaattgtgttttatagacattaatactatttaaagctaaaatcagcagatgtGCTCACTAACTAGTGAAGTTAAACAGGTCACTACAGTCAGATGTGCTTCAGACTATCAAACACACCAGTTTAacacaaacattttgtttttgtcctctacacaggctacagttctgtaaactcactgttcggtcctgtgagagtttatcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggagacactgaggtctgagtttaaaaacctgcttgactgactgattgattttttttttttgttacatcaGACAGATCACATCAACAGTGTGGTTTTTAGTAATGTGTTCTTTCTTAGATTGGTGACGTGTAATCTCACTGTTTggtcctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggagacactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaagtatgtggagcaagtatttattacatataaaataaaatgctttacattcttgttggggagatttttcatttctCGAGCAATTCTTCTGTTAAATTCCTC
>TCONS_00056072
atcaaatgtgaaacagctgagatgtcagatcagggttaaaccaactgcattcatgttaaggactatatatatatatatatatatatatatatatatatatatatatttatgtatgtatgtatgtatgtatgtatgtatgattgtttcctgaaagctctgctaatgtctgcattggtgtgttagctgcagtatggcagaggagcgagtaaaggactctctctcagagaaacacagtgtgagatcaggatctcgtgtgtccagctctgtgtctctgaagagtgactggtctAAAGGTGGCAATCTTCCAAACTTCAGTGAGAAAACACCCTCATCAGTCAAAAGtgtgagatcaggatcatgtgagtccagctctgtgtctctgaagagtgactggtcaATGGATCGTCCTCCACCAGacctcagagagaaaacaccatcatctgcccgaagacacctagtggcagatttagtttcttattcagacaatctccagtggatcttccagaatcttgagatcaaaatgatcagatttctgaAAAAACAACTGGAAAACTTTAGGAAAATCttacaagacaaaaacagacaagactttgtaaaggagtttaatgagaacagaagcattatcacagaagcagctcttgatctcacactcttcttcctgagagagatgaagcaagatcaagcagctgatactctccaggatgagctgttcttcattaatcagcttaaatgtagcctgaagaaaaaatatcaaagtgtgtttgaaggaattgctcagcaaggagactccacacttctgaataacatctacacagatctctatatcactcagggtgcgagtgaacaggtcaacactgaacatgagatcagacagattgaagctgcttccagacgtcatcagtcactagagatacaggttgaatgcaaaaatttgtttgaagcagctgaacaagacaagcagatcagaactgtcctgacaaaaggagttgctggcatcgggaaatcagtctctgtgcaaaagtttgttctggattgggctgaagggaaagaaaatcaagacatcagcttcatagttcctcttccattcagagagatgaacttaaaggagaaagaaagacaaagtttaaaagacctcataactcagtttttcccagagactaaaggactgaaccttacaagaagcacacgattcaaagtcctgttcatccttgatggattggatgaatgtcgtcttcctctgaactttgctggtaatgagacgtgtcgtgatgtatcttcagcagtctctctggatgttctcctgacgaacctcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctgctgactgtatcgaccggctgacagagatacgaggattcaatgatgcccaaaaggaggagtacttcagaaagagactcacagatcagaatcaggccggagaaatcattgatcacattaaacagtcaaagagtctctttattatgtgccacatcccagtcttctgctggatttcagccactgttctccagaacatactgaaactgaaacacagggctcatgctgaaacactgcaggaatctcccaagactctgacacagatgtacacacactttctccgctttcagatccagcagagcagaagaaagtatgatggagaaaacacagcagatgtctcctgggatccaaagctcatcctttcactggggaaactggccttccagcagctagaaagaaacaatgtgatcttctatgagagcgatctgacagactgtggcattgacgtctataaggcatcggtgtactcaggcatgtgtacccagatctttaaggaggagacggggatcattcttggtaccatgtactgctttcttcacttgagcattcaggagttcattgcagccctttatcaacatctgattctaGGCAATGACAAGACACAAGCAGAAAACAGCAGAGATGAGTCCATGATTGATTTgctgaagactgcagtggacaaggctctggaaagtgagaatggacatctggacctttaccttcgcttccttctcggtctgtcactccagtccaatcgacaactcttacgaggcctgttgacacagcaggatgacagagaccagagcaaagaggaaataattgcccacatcaagcagaaacttgaagggaatctgtctccagagagatccatcaatctgttctactgtctgaatgaactgaacgaccaaactctgctgaaagagattcagtctcacctcagtagaggaagtctgtcatctgctgacctttcacctgcccagtggtctgctctggtctttgtgttgttgacctcagaggaggagctggaggagtttgagcttcagaaattccagagatcagacgagtgtctcatcagactatcagcagtcatcaaaacctccacaagagctctgctacagttctgtaaactcactgttcggtcctgtgagagtttatcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggagacactgagATTGGTGACGTGTAATCTCACTGTTTggtcctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggagacactgagattgtctggctgtatggtgacagaggaaggctgtggttttctgtcttcagctctgacttcaaacccctcacacctgagagagctggatctgagctacaatcatccaggagattcaggagtcaagctgctctctgaacaactggaggatccaaactacacactggacaaactcaatctggatcatggaggacacacgaggattacagcaggaccacgcaaatatgtctgtttcctcactctggatccaaacacagcacacactcaactcaaaCTGTCTGAGGAGAACCGAGAGGTGAAGCGTGTGttagagaatcagccgtatcctgatcatccagacagatttgatgattatcctcaggtgttgtgcagagagggtgtgtgtggacgctgttgctgggagattgactggagtggagatgttggtgtgtgtatatcagtgtcatataagagcatcaggaggaagagaGGAGGTGATGAGTGTTGGTTTGGacgtaatgctcagtcctggagtttgatctgcTCTTTCTCCagtttcacattcagacacaataacacacGCACTGTTCTCCCAGTGGAGctgctcagcaggagaataggagtgtttgtggatcacagtgcaggaactctgatcttctacaacatctatggagacacaatgagcctcatccactcagtccagaccacattcactgagccgctctgccctgggtttgggtttgggtttgttagttctggatcatcagtgaaactgagctaaAGACTGAcaagagatttacccagaatcctctgcaggagcagtcagcagctgtgtgtgtatgtgtgtgtgtgtgt
>TCONS_00056073
tcatagaatcttgagatcaaaatgatcagatttctgaAAAAACAACTGGAAAACTTTAGGAAAATCttacaagacaaaaacagacaagactttgtaaaggagtttaatgagaacagaagcattatcacagaagcagctcttgatctcacactcttcttcctgagagagatgaagcaagatcaagcagctgatactctccagggtaagagactTATGACCATCTGTCAGACTGACACTTACTAATATAGCTGGAAAAGTCAAGACTAAAactctctgtttctttgctcctgtgtttagatgagctgttcttcattaatcagcttaaatgtagcctgaagaaaaaatatcaaagtgtgtttgaaggaattgctcagcaaggagactccacacttctgaataacatctacacagatctctatatcactcagggtgcgagtgaacaggtcaacactgaacatgagatcagacagattgaagctgcttccagacgtcatcagtcactagagatacaggttgaatgcaaaaatttgtttgaagcagctgaacaagacaagcagatcagaactgtcctgacaaaaggagttgctggcatcgggaaatcagtctctgtgcaaaagtttgttctggattgggctgaagggaaagaaaatcaagacatcagcttcatagttcctcttccattcagagagatgaacttaaaggagaaagaaagacaaagtttaaaagacctcataactcagtttttcccagagactaaaggactgaaccttacaagaagcacacgattcaaagtcctgttcatccttgatggattggatgaatgtcgtcttcctctgaactttgctggtaatgagacgtgtcgtgatgtatcttcagcagtctctctggatgttctcctgacgaacctcatcaagggaaatctgcttccttctgctctcatctggatcaccagcagaccagcagctgccagtaagattcctgctgactgtatcgaccggctgacagagatacgaggattcaatgatgcccaaaaggaggagtacttcagaaagagactcacagatcagaatcaggccggagaaatcattgatcacattaaacagtcaaagagtctctttattatgtgccacatcccagtcttctgctggatttcagccactgttctccagaacatactgaaactgaaacacagggctcatgctgaaacactgcaggaatctcccaagactctgacacagatgtacacacactttctccgctttcagatccagcagagcagaagaaagtatgatggagaaaacacagcagatgtctcctgggatccaaagctcatcctttcactggggaaactggccttccagcagctagaaagaaacaatgtgatcttctatgagagcgatctgacagactgtggcattgacgtctataaggcatcggtgtactcaggcatgtgtacccagatctttaaggaggagacggggatcattcttggtaccatgtactgctttcttcacttgagcattcaggagttcattgcagccctttatcaacatctgattctaGGCAATGACAAGACACAAGCAGAAAACAGCAGAGATGAGTCCATGATTGATTTgctgaagactgcagtggacaaggctctggaaagtgagaatggacatctggacctttaccttcgcttccttctcggtctgtcactccagtccaatcgacaactcttacgaggcctgttgacacagcaggatgacagagaccagagcaaagaggaaataattgcccacatcaagcagaaacttgaagggaatctgtctccagagagatccatcaatctgttctactgtctgaatgaactgaacgaccaaactctgctgaaagagattcagtctcacctcagtagaggaagtctgtcatctgctgacctttcacctgcccagtggtctgctctggtctttgtgttgttgacctcagaggaggagctggaggagtttgagcttcagaaattccagagatcagacgagtgtctcatcagactatcagcagtcatcaaaacctccacaagagctctgctacagttctgtaaactcactgttcggtcctgtgagagtttatcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggagacactgaggtctgagtttaaaaacctgcttgactgactgattgattttttttttttgttacatcaGACAGATCACATCAACAGTGTGGTTTTTAGTAATGTGTTCTTTCTTAGATTGGTGACGTGTAATCTCACTGTTTggtcctgtgagagtttgtcttcagctctacaatcctcaaactgtgtgctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagcttctctctgatggactgaagagtcaacactgtaaactggagacactgaggtaaatgactctccactctaca

Function

symbol description
si:dkey-156k2.4 Predicted to be involved in intracellular signal transduction.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000102927

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00056069 False 1028 mRNA 0.41 3 39372775 39479644
TCONS_00056072 False 3648 mRNA 0.45 11 39474726 39487825
TCONS_00056073 True 2540 mRNA 0.44 2 39478868 39484284

Neighbor

gene id symbol gene type direction distance location
XLOC_028989 BX548067.3 coding downstream 8560 39364038 ~ 39364215 (-)
XLOC_028988 CR352303.1 coding downstream 14990 39357666 ~ 39357785 (-)
XLOC_028987 NA coding downstream 62092 39309785 ~ 39310683 (-)
XLOC_028986 si:ch73-236c18.2 coding downstream 104724 39244401 ~ 39268051 (-)
XLOC_028985 si:ch211-22k7.9 coding downstream 185874 39158005 ~ 39186901 (-)
XLOC_028993 NA coding upstream 155799 39643624 ~ 39702186 (-)
XLOC_028994 NA coding upstream 224953 39712778 ~ 39713950 (-)
XLOC_028995 CR749167.1 coding upstream 341350 39829175 ~ 39829819 (-)
XLOC_028996 znf979 coding upstream 431391 39919216 ~ 39942347 (-)
XLOC_028997 si:ch211-215p11.1 coding upstream 504428 39992253 ~ 40008875 (-)
XLOC_028983 NA non-coding downstream 456331 38913533 ~ 38916444 (-)
XLOC_028979 BX324212.1 non-coding downstream 799169 38564564 ~ 38573606 (-)
XLOC_028998 NA non-coding upstream 531148 40018973 ~ 40019703 (-)
XLOC_029001 NA non-coding upstream 1000739 40488564 ~ 40497140 (-)

Expression


Co-expression Network