XLOC_028999 (si:dkey-22h13.2)


Basic Information

Item Value
gene id XLOC_028999
gene name si:dkey-22h13.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 40357513 ~ 40364889 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00056081
CTGTGACGTCATCAGACGGCGCCGCATCACCGCTATGGTTCAACTGGagtaaggataaagtgtccaaacacagagaaaaactcctgctgaagcgaatgatctccacactgttataaagatggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagacctgatggtgctgaaagaagagactcatcaatgcaatgaaatggaagagaaacaTCAAGACATATTggctgatgaaaaacccacactgactaaaaagacttcatcacgtggaagacctcggaaatccaaatctaAGTGTAATTTCAGCAGTAAACAGCGTAGAAAGACTTTTAGTCAAAAGCCAAAGCTTGATGTTCACACgagagttcacacaggggagaaaccttgcacctgcaaacagtgtggaaaaagcttctatactATAGGAAACTTAAcggtgcacatgagaattcacactggggagaagccttacacctgtgaacagtgtggaaagagtttttgtaaaaaagaaaactttaaaacccacatgagaattcacactggagagaggccgtacacatgccaacagtgtggaaaaagcttctatcaTTCAGGAAACTTGATaatgcacatgagaattcacactgagGAGAGGCCTTACTCTTGccttcagtgtggaaagagttttaagcaaaatggcaatcttgaagtccacatgagaacacacactggagagaaaagatttacttgcacacagtgtgggaaaagttttgttaaaaaacaaaaccttgacatccacatgaggattcacaccggagagaaaccttacacatgcacagagtgtggtaaaagtttcacaTATAAAAGCTCACTCAAtaaccacatgagaactcacaccggagagaacccgtttgcatgtgctcagtgtggaaagagcttctcaAGCAAATCTAGCCTCatgaaccacatgaatggtcacactggaaccatagtgttcacatgtgatcagtgtggaattAAACTCAAACGCAAAGACTACATTAGGCGACACATGAAGACCCACTCAAGAGAGGATCATTTTAGATGCAatgagtgtggaaagggctttacccataaaagaagcctcagcgctcacatgaagcttcacaatgaaGAGCAGAGTCCTGAaaaatgaggccttgtccacacaaacacgggtatattcaaaatggcagctttttcatgtagcttggctgttcattcaagtgaagtttatttttaaactacttttgaggggatcacatgcttatgattgtccacagctggtccagcattagctaaaacatgattcaccaatcagatgattcctaactcactataaataaccagagttttttttACCTCAGTTATTGCTTACATGCAGGGCCGGatcaagctgaactgccgctctagtcAGAAGACTAATGTgaaatgtgaaaacgaaagtgaccggttatgaaaatgaagcgaGGTATCGTGGACCTcttttctgccgccctatgcgcggatataactgaggaagCGCGAGTGCTGAGGGATGTGTcacggacaccgccctctctattctgtcgcctatgcacgaatataactgaggacgcgggtggtgagggaggtgttgcggacataACTGACTACGCCGTTTGTTATAAAGTAGTGTCTCACAGACTGTACTTTGGTTTAAGGTACTTGAAGACGGATGAGTTAACATCACTGATGAGGACCTACACTATTAGTTGTCTTCAATAAAGTTTTCTGCctgtaa
>TCONS_00056082
atggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagacctgatggtgctgaaagaagagactcatcaatgcaatgaaatggaagagaaacaTCAAGACATATTggctgatgaaaaacccacactgactaaaaagacttcatcacgtggaagacctcggaaatccaaatctaAGTGTAATTTCAGCAGTAAACAGCGTAGAAAGACTTTTAGTCAAAAGCCAAAGCTTGATGTTCACACgagagttcacacaggggagaaaccttgcacctgcaaacagtgtggaaaaagcttctatactATAGGAAACTTAAcggtgcacatgagaattcacactggggagaagccttacacctgtgaacagtgtggaaagagtttttgtaaaaaagaaaactttaaaacccacatgagaattcacactggagagaggccgtacacatgccaacagtgtggaaaaagcttctatcaTTCAGGAAACTTGATaatgcacatgagaattcacactgagGAGAGGCCTTACTCTTGccttcagtgtggaaagagttttaagcaaaatggcaatcttgaagtccacatgagaacacacactggagagaaaagatttacttgcacacagtgtgggaaaagttttgttaaaaaacaaaaccttgacatccacatgaggattcacaccggagagaaaccttacacatgcacagagtgtggtaaaagtttcacaTATAAAAGCTCACTCAAtaaccacatgagaactcacaccggagagaacccgtttgcatgtgctcagtgtggaaagagcttctcaAGCAAATCTAGCCTCatgaaccacatgaatggtcacactggaaccatagtgttcacatgtgatcagtgtggaattAAACTCAAACGCAAAGACTACATTAGGCGACACATGAAGACCCACTCAAGAGAGGATCATTTTAGATGCAatgagtgtggaaagggctttacccataaaagaagcctcagcgctcacatgaagcttcacaatgaaGAGCAGAGTCCTGAaaaatga

Function

symbol description
si:dkey-22h13.2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000112725

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00056081 False 1804 mRNA 0.43 3 40357513 40364889
TCONS_00056082 True 1080 mRNA 0.41 2 40358119 40364432

Neighbor

gene id symbol gene type direction distance location
XLOC_028998 NA coding downstream 337810 40018973 ~ 40019703 (-)
XLOC_028997 si:ch211-215p11.1 coding downstream 348638 39992253 ~ 40008875 (-)
XLOC_028996 znf979 coding downstream 415166 39919216 ~ 39942347 (-)
XLOC_028995 CR749167.1 coding downstream 527694 39829175 ~ 39829819 (-)
XLOC_028994 NA coding downstream 643563 39712778 ~ 39713950 (-)
XLOC_029000 si:dkey-22h13.3 coding upstream 37128 40402017 ~ 40407853 (-)
XLOC_029001 NA coding upstream 123675 40488564 ~ 40497140 (-)
XLOC_029002 NA coding upstream 132928 40497817 ~ 40503730 (-)
XLOC_029003 si:dkey-57c22.1 coding upstream 160186 40525075 ~ 40536509 (-)
XLOC_029004 NA coding upstream 187270 40552159 ~ 40598742 (-)
XLOC_028993 NA non-coding downstream 655327 39643624 ~ 39702186 (-)
XLOC_028992 BX548067.1 non-coding downstream 887804 39451635 ~ 39469709 (-)
XLOC_029006 NA non-coding upstream 346973 40711862 ~ 40937754 (-)
XLOC_029007 NA non-coding upstream 391954 40756843 ~ 40757716 (-)

Expression


Co-expression Network