XLOC_002900


Basic Information

Item Value
gene id XLOC_002900
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34196782 ~ 34198566 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006086
AGTAGTTTAGTGGGTTTAACTaatgtcacatctgtttttattcatttcagatgcagaaacttttgacatatgaattcatcttgactaagggtaaggtttttgttcagaattaatcattatttaaaatcattgtattttctttgttattatgtacagattttaaaagaatgtactttcttttaataaagaactCTTCACAGCACTGCATCTGAACAGTCACAACCTCACAGAGCTGCACAACTACCCCACTCAAGATCAGTGTTGAAGCTGGAACCTCATCTTGTGTACAGCAAAGGCAGAGCTGAAAATTCACAGTTTGTCTTGTATTGTATGGTAAgtcatagttttattaattttttaattttattgcaacACTAAGTAGTCCAATCTGTGGCCAATATGATATAAAGGGCCTAAAATGGGACTGACGTGatcattgttttgatttctagataagtactcatggggctacacatgcagctgaagttAGCTTCATTGAGTTGGACATTTCTTTCGGTATACACTTAAAGAGGTTCACCCAAAaagcaaaattctgtcattaatgactcaaacttcacttgttccaaatatgtctgacttgctttcttcagttaaacactaaaaattatattttaaagaaagatgaaaacctgcaaacactgacttccatagtatttgttttttcctactatgcatgtcaatgatttcagcttttcagctttcttcaaaaaacttccttcatgttcaacacaaagtaacttggaagtttttaaaaaaggtttacaacaacttaaaggagagtaaatagtgaactgttcctttaacccaatctagttgactttactagaaaattgtatagaaacccagtgccttaaaccccttacattttatacagggtacaacttaacagccatacttgaattaaaatattactgtaagttcaagaagattgtaaaggttattggttaatttaaagtgggctgtttagtttcaccttgtgtaaaaacataaaggGTTTAAGGCAACATGTTTCTATGCAGTTTACACTCTTAACCCAAACTAGTTGACTTTATTGAATAAAGTCAACTAGTTTGGGTTAAGAGTGTAATGGTTTACAGTAATAGCAGTGAATAATgcaggcataaaataaatgtttagccatgtaaagcaataagcttgttataatttagaaatatttttagggTGGAGCACTGTATGCTGTTGTAGTTTTCATATAATTGATGAATCAAACATgagatgtgtgttttaaattgcaagaagtgaattaacaatatgttcatcaagattcaaatcttgcatcttatatatttttttaaggttttggcccaataatacccatattctgctatttaaaaaaacatgctggaatttgtgtcagcattcccttcaatgaaaactacagcagtggacatcagtggtgataaaaatgtatgcaaagGATAATGGTGTTCATAATGAAAAGTGCAGTCACTATCCTGATCTCTGAGTTTGTAGAACTGACAGATCTGCTTGGAATACATGGaaacatgctggaaatgtttaacctattatacagttaattaaagagtgccaggtttaatgacactttacatatataaataaatatcacggAACTTTCTAAATGAAACCTAACACTCATTCTTTGTTCAGTAATGATATTGTGCACTTCTAATACTTTACAGTGGCAAAACCTGGAATAACGCTtgggagccctccaggaattcctgacactttacgcccaagtctcctcatgctaaccggatt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006086 True 1785 lncRNA 0.33 1 34196782 34198566

Neighbor

gene id symbol gene type direction distance location
XLOC_002897 pimr150 coding downstream 46110 34120543 ~ 34150672 (-)
XLOC_002896 pimr144 coding downstream 88863 34086591 ~ 34107919 (-)
XLOC_002895 BX548044.8 coding downstream 129496 34059007 ~ 34067286 (-)
XLOC_002894 pimr149 coding downstream 150025 34043561 ~ 34046757 (-)
XLOC_002893 rfc3 coding downstream 163102 34021368 ~ 34033680 (-)
XLOC_002901 pimr167 coding upstream 21926 34220492 ~ 34243269 (-)
XLOC_002902 BX510654.1 coding upstream 128696 34327262 ~ 34327394 (-)
XLOC_002903 dclk1a coding upstream 538756 34737322 ~ 34871737 (-)
XLOC_002904 ccdc169 coding upstream 673629 34872195 ~ 34889053 (-)
XLOC_002905 sparta coding upstream 690762 34889328 ~ 34916208 (-)
XLOC_002891 BX569785.1 non-coding downstream 316418 33876131 ~ 33880364 (-)
XLOC_002890 NA non-coding downstream 531993 33663165 ~ 33664789 (-)
XLOC_002885 dre-mir-130a non-coding downstream 819568 33377130 ~ 33377214 (-)
XLOC_002884 dre-mir-301a non-coding downstream 819696 33377001 ~ 33377086 (-)
XLOC_002883 dre-mir-454a non-coding downstream 819841 33376818 ~ 33376941 (-)
XLOC_002906 CT573139.2 non-coding upstream 752494 34951060 ~ 34959178 (-)
XLOC_002909 NA non-coding upstream 855715 35054281 ~ 35058444 (-)
XLOC_002912 BX465844.1 non-coding upstream 961444 35160010 ~ 35164291 (-)
XLOC_002917 NA non-coding upstream 1114326 35312892 ~ 35321637 (-)

Expression


Co-expression Network