XLOC_029001


Basic Information

Item Value
gene id XLOC_029001
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 40488564 ~ 40497140 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00056084
GACCTCAGCTAACATCATGTAAAACAATGAACAGTTTTTGCAATTGTAAGTTTTAATTAGTAAAACAGATATTTGATGTTTTAAGTACTTTGTGATATGCTCAAGAATGTTCCTTAATCacagtaaattaaatgtaatgcacAAGCTCTTGTGACATGTTGCTTTACCATAATGTTTTCAGCTAAATCCAGTAATATTGCTCTTTtaacattttgcaaaaaaaaactactgttatTACATTCATAAATTGAGTATTACATTTTAAGAGCCACAAATAACTTTTAATTGCTAATTAGAAGCAACAGCCCTGTCAGGCTATAAAGAAATGTGCAGTACAATGTAATCTTTGTTTGTGAGACAGATATAACATCTGTTTCATCTGTAATGTTTTAACAGCATTTGTCCGTGACCACCAAAAAGCTACAGAAAAGCAACAGCAGGCCTGTTTTGAAACTCCCTCCACTAGTCAAGGTAACTGGCTTTACATGAATACTGTAACTACAAACTGTAAAAGCTGTTACTTCACAGCATTCATGACTCAAAAGCTGACTCAATGACAGGCTGGTTCATGATTCCTATTGCTGAATAGACATCACTCACCTACAGtttgtgcacaaatataaataaatgtaatattctgATCCTATTTTTAATAGAAGTACATTGTACCTCTTCCAAatcaatctatatatatatatatatatatatatatagtttaagtaaaagtcacttaaataatatatacagttgaagtcagaattattagccccccagtttattttttccccaatttctgtttacagagagcagatttttaaaacatatttctaatcatattagttttaataacttatttctgataactgatttattttatttttaccatggtgacagtaaataatatttgactagatattttttcaagacacttctatacagcttaaagtggcatttaaaggcttgactatgttaattaggttaactaggcaggttaggttaattaggcaagttattgtataatgatggtttattctgtagactatcagaaaaaaataaagcttaaaggggctaataatttttaaccttaaaatgggtttaaataattaaaaactgattttattctagctgaaataaaacaaatgagactttctctagagaaaaaatattatcagacatactgtgaaaatttccttgctctgttaaacatcatttggaaaatatttaaaaacaagaaaaactaattcaaagggaggctaataattctgacttcaactgtatattatatggCTAGGAGAAAGTCTAACACAAGCTAACTTTTAAATTGAGTCCACTGGACAAGAAATGCTCATAGGGGAAACTAACATTTAAACATAAGGGGTCACAATAAACTGGCCGagaagaaaataattttataaaataggATTTCAGTAATTAAGATGAATAGTTTAGGAAACCCAGTTTGCCAGAGCCAAAACAAGTACAATGTGTCAGATTCTGTGTCAAAGAATGACACAATTTGACTCAATGTATCGATTGTACCCACTTAAGAATCACACGCAGAAATGTTGTAAAATGCCCTGAGACTTTTATAGGCATAGGTTGAAAGGACAAGCACCACTCCCTTTGTATCTGTTTAAAGAATTTATCTTCCAGAAGTTTTCAGTgttcatttcaaaattaatttcctATATTGAAAGATTCGTCCGCTTCATCATTGAAAGAGTTAGGTTTGAAAGCATCAGGAACCCTTTAGTCACTGGCAAGTACAATGTTTCAGCTTCTGTGTCAAAGAATGACACAATGGGATACAATGTCTCAAAATGTATTCACTCAAAAATAACCACAAGTTGAAATACTGAAATACACTGAGAACTTCATAGGCATAGGTTGAGAACTGGTCCAGAAGGACAGGACCACTTCCTCTTGTAACTGTTAAAAGATATTATCTTTCAGAATCTTGCAGTAAGTCATCAGAGTTCATCCAGAGTTTAAATCCTTCTCCTATCCTTAAATTTTCATTGTTACTAGCAGTTAAAACCATGAATCCCTTATCACTGTCAATATAACCAGATATCGACTTTCATAATAATTGTGCACAAATTGTATGTTTCATGATCTGCTTATTCTGAATAGACTGAATCTTCTCTGAACCAGGAATTACAATTGAAAAAGTCAAATAACATTTCATAATTGCAAAGAAAATAATTGCAGTTTCAGCTCCAGACGTACCTGTGAGGTTCTGCCAGGAAGTGGAGCACCAAGACACTTGGGATAAACCCCAACCTGAAAATCaagAGGATGCATTTTCTGTGCTGCGGCCTTTACAAGACAGAGCACCACacaaCACATACTCTGTCCAAGATCCAAAGCCATCAGCAGATCAAAGAAAAATGCAGACACCAGTTTTTCCAATAAGCATGTCCCATGTAAATGAGCAAGAAGATGCTTGGGGGGACCACCCATCGAGCTATCGAGAAGACACAACTTCTGAGCTGAGACCCTCAAGTACCCAGGCAAGAGCGAAGAATGCTTCTGGTATCAGCCGATGGAGCTGCATCTCCAGTCAATGCACACctgtggAGAGGGCAATTTTGGAGAAGCTTAATGAGCTGGACTTGAAGATTACCCATCTAACTTCAGTGGTCTAGTCCCTTGCCCCTCGGTCAAGTGGTCAAATGGTGGTGGACACTGAGGATGACACCTTTCCTATTGAAACAATGGAGGACCTTGAACAACTGGAATGGCAATTAGCTGAAAAACCAATGATGGAGAAGATGatgaaGAGGTTATCCATCAGAGGAGGACAAACTCTGAAAAAAACCATTTGGCGTGTAGCCTCCAAAGTGTTTGGTCCAGTGGCCAAACAGCTCAACTGGTGTGGAAGAGGAGATAAAAGAGgcctaaaaaacacaaatattgggACACTTGTGATAGGTGCAGCTATGAGGAACCCCGTGCTTCCGTCTCCAACAGAGGCAGAAGcagaaaaatatttgaaagacTTTCTCCGCTTGGCCCCAGGAAGAATGGCCTCTTAAGCCagttgctattttttatttatttatttgctgctatttgGTTTTGTTTGCTTCAAAAAATA

Function

GO:

id name namespace
GO:0022626 cytosolic ribosome cellular_component
GO:0005840 ribosome cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00056084 True 3100 lncRNA 0.35 9 40488564 40497140

Neighbor

gene id symbol gene type direction distance location
XLOC_029000 si:dkey-22h13.3 coding downstream 80711 40402017 ~ 40407853 (-)
XLOC_028999 si:dkey-22h13.2 coding downstream 123675 40357513 ~ 40364889 (-)
XLOC_028998 NA coding downstream 468861 40018973 ~ 40019703 (-)
XLOC_028997 si:ch211-215p11.1 coding downstream 479689 39992253 ~ 40008875 (-)
XLOC_028996 znf979 coding downstream 546217 39919216 ~ 39942347 (-)
XLOC_029002 NA coding upstream 677 40497817 ~ 40503730 (-)
XLOC_029003 si:dkey-57c22.1 coding upstream 27935 40525075 ~ 40536509 (-)
XLOC_029004 NA coding upstream 55019 40552159 ~ 40598742 (-)
XLOC_029005 si:dkey-207m2.4 coding upstream 57564 40554704 ~ 40589579 (-)
XLOC_029006 NA coding upstream 214722 40711862 ~ 40937754 (-)
XLOC_028995 CR749167.1 non-coding downstream 658745 39829175 ~ 39829819 (-)
XLOC_028994 NA non-coding downstream 774614 39712778 ~ 39713950 (-)
XLOC_028993 NA non-coding downstream 786378 39643624 ~ 39702186 (-)
XLOC_028992 BX548067.1 non-coding downstream 1018855 39451635 ~ 39469709 (-)
XLOC_029007 NA non-coding upstream 259703 40756843 ~ 40757716 (-)
XLOC_029008 NA non-coding upstream 328682 40825822 ~ 40828360 (-)

Expression


Co-expression Network