XLOC_029002


Basic Information

Item Value
gene id XLOC_029002
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 40497817 ~ 40503730 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00058276
gacagccaaacaggtttggaacaagtgaatggtgagtaaatggtgatagAATTGTCATTCTTAGACGAACTGTCCCTGTAATTTTGGGTAggataaaaaatacattcaaaggAGTAGCAGAATATAGGCATTCTTATGGGTTTAGTTCTAGttcaattaaacaaacattttataaaaaggaGTAATCATACATTTATTAAGCTTTTTATACTGCTTCTAGGCATGACAATGACAAAACTGACGTTACCTGTTTTATCTTTTCCCTAATTACAGAGTTCTCTACAGTCAACTGACAACTACATAACACTTACACATTCTGTCCCTCAAAAATAAGGTACGTGTAATTATTGTGACAGAACTACTGGTCATCAGGAAAGTGGTTCTAAAATTTCAAATCTTGGAGACTCATAACACTGCACATTCTGGATGTCTCCCATATAATATGCACCAATTAGTTTACCAAGCTTCAGTTTTATAAAGTTCAATTAAATGTAAGCGTACATGTAAGCAGTGTgatgtaaagcaggtcgcacaccagaagcgccgcgacacagcgcgcacatgacagtttaaagcatCACACActagacgcgcacattcgaatgatatttaacattaaactaatcagatgCCGCTTTGTAGCGAGGCTGAAAAATGAACTTCGTCCTGTGCCGTGGCGCCGCCGACTTGCAGCACCTGTGTGTGTATTCTGAtcgaaacctatgtttagaattctaaaatgcatggcgctgcgtggcgcgctgcggagcggcgcttctggtgtgcgacctgcttaagggtCTTAAAGTACTGAATTTCAAAACCAATGCAGGCTTAGCATGTTAGGGcaatgcattgtgtgtgtgtgtgcattacgGATTGTAAAAAAACAATCTTACTGGACACAACAGGAGAAAAGCCAAAGCCAAGGTGGACAAACAGCTTTATTCAATGCATGTGTTATAAGCATCACTATTGAGGGAACAGTATGGTGGCATTGACAAGCAGCACTGTTGAAGACGGCACTGACTTCTTGGACTGTTTGTCCCATGTTAATGAGACTGAATGCAGTATCATCCTGGCAAGTGCTTCATAAACGAGTCAATCTGACTAGTTCAAGTCCCCTCAATGATGACTTTGACAAGAtgggaaacagaaaaaaaaaaaaattaacacatgcATCACTAAATGAATTACTCATAATCATTCACAATTACAATCCGAGTCTGCCAAAAGATACAAGGACAATATTAGGTAAAGTGCGTTCAAAGAGAATAGCCTTCTTTTTGCAAATGAGTTCTCTTTGAACGCACAGGGTCAGTGATATACTTTTGGTTCAATGGCATCCATTTCAAGGGTCCTCTATGACAACATGTACATTTTAAGGAAGATAAAAATTTTAAGTTCCAGGTGAGCATTGATGGTCTTCCTCTCTACAAGAGTTCATTTGCTCAATGCTGGCTCAGTCTAGTAGAAGTTTAAAACTTGGTGCAGGGGGAACATGTGCCAATAGATTTATTGTGGGCTGAAGGTACTGTAAAACTAGCTCCCTGAATAAGTATCTCGAAGACCTAATCTCTGAAatcaaagagttaaaaaaaatggcTTTGAATTTGAATGACTAAAGTTAACATTCAAGTTTGCTTTTGCAACATGCTTTTCTAAAATGGCCAACCAGGTTACCATGGgtgtgaaacatgtattcaggATGGTGTGCACCTGGAAAACAGGATGGCATTCCTCAGAAATGTACCTAGAGTGAGTATGCCCATATACTCTGAAACTGGACCAGGCAAACCATTTGTCTATATTGGCAGAAAGGTTGCAAAGCTGCAaaacataatttcagaaaagcatgGCATTTACATGGTCTACACCACGTTCAGCAAACACTAACTCCTTTTTGACTATCCCCACGCTTCCATCCTCCACACTTGGCATCTACCTACTGATGTCATGTCAGGACCAATCCATCTCTGCAAGATTGAAAATATTGAAATGAAAGCTTTTTTTAGTCCCTTGcagaaattattttgtttcagtttaaaCTTTACACACATAGTATCTATctatttccacattttttttttttttacatatactgtatagtgCGAGTATAATTATTGTGCAAGATGAtattctgatcatattttttcctaGAGCATTTTGAAAATTGTAAACCTTAATCACTACCAGGGCTtgatattgacttttttttatcaCCAGTCACTGTGGCTTGTAGTTTCCAaggttactagccacttgcctttttcactagccacaattttgttgttgggaaaatatattttatatgcagaaAATTGActtgcaagcaaaagaaagcaggtgaaaaacaaacCATGTGTGATAATGAAATATTAATCATGTGCACACAGTTAACATTAGgcacattaataatctgttcaaacaaTAGTTAAAGTGGCAATCACTGCTGCTTACAAAGACCTGTTTTTAAATCTAAAGCTCTTGAAAGCAGAAGGACTGTGGATGCACGACAATtacttttgtccagtctatttcaaataGAATCCATCACACCAGTTTCATTTCCAAGCAGGATTGCTACATGCAAGGAAACGGTAGTGCACAAGTATTTTCAACACTCGGCTCTCAAAAACATCTCTCAGTGAGTAAGAATAGCCTGTGTCTCACAGTGTGTATGATCAAGCTCTCATTTGGTATTCATCTTTTGTTTTGCATAaacacagttgtttttgtcaatcatgctgcttctcgattctgaAATCTCATTTGCTGTTCCACTCATTACTGTGTATATcactaattttgaaaaaaataaatataattttttttaaatcacatttgcatgcatattgataaacggtaaaaaactgaaattataatatttagtGATAAGCCAGCATTGGCCTGGTCAGGACActgacaatcctgtctactgtcccaaaaactggaccatccttattgttgaaccctgcttttaagaaaactacaattaaaaaattattttcaaccagccaaagtggctagtgggaatGGCAGTCTttacccgccacagctgaaatctacctgcatttggtggTTTGGCGAGTATTAATGTCAAGCCCTAATCACAACTATAACCAATATGTAATATTATATGAAGGCAGAAAGTGAAAATAGCTCGATTCAAATGATCCAAAATAGTTGTCATTACTTTATTTTGCAATTTCTAGTATTGCCTTCTTCTCACCgtcatttaataattttgcaaCTTTTCAGTCCAAGTTATATTTTTACCAGTAAAACACctgaatttaaagcatttttacttTGAGTGTTGTCAGAAAATTATATATCAATAATGAATGATGAATACAAAAGTAGTAGTGGTTCTTAAGATTGATGTGGTCTGGAATTGGTAATATATGCTTGGGAAAAAATGTATCTGAATATTAACTTGCATCATTATTTTGCATGAAATGTATTGTGTATTTGAATCATGCACATAAACAACCGAAATTTAATATGTGTCATTTAACATTATGGGGCTCTAGGTTCTTGcagcttaaaaaaaatgtacctgATAGTGGAGTTCATTCACGAAGGGAGTACCGGACCTGTCGCCAAGTCTTGGTACTCAGAGGGTCACTCGTGGTGGCCTCCATACAAGAAGATAGACAGGGTATTGAGGAGTGTCCGGTTGATGGAGGCACCACAACCAGATAAAGGTTGGACCAAGCATCAGGCCAGAATTCTACACGAGTCAGGTACACAGAAgtacattgtaaataaacaatattaaacaaaGGATAAATTCAATAATATATGACGTTCCATAGACTACTGCATTCATGAATTGTTACATACTTTATTTCTTTCAGCATCTTTTGACAAGATTTCAAAGAAATGGAAACAGGCATGCTACACATCTGACATCTCGGAATCTGAAATGCCTGC
>TCONS_00056085
GtaattattaatagtaaaaaataaaataatgaatattgttaaataaaaataataaatatatataaaattaactaattaattaatttcttacaATTATAGACAATGACATTTCCATTAACCCTGTCTGAGTGACACGTCGTGAGGCCATTACGTCACATGATCAACGGCTGTTTGTCAACAGATGACATTGCACCctcaacgtttgttttttttataataggtTGATATTTAGCTCAAGAATTATCTGTAAATACAAAATTTGTACATATAACAATCCTGTTCATTCGTAGTTATCTGTTTGTTtacatattaactttttttttgtttattcggTTTTAAGCTTAAGGTTAATTTGTCCGTTGTTGagaaaagacagccaaacaggtttggaacaagtgaatgAGTTCTCTACAGTCAACTGACAACTACATAACACTTACACATTCTGTCCCTCAAAAATAAGGTTCTTGcagcttaaaaaaaatgtacctgATAGTGGAGTTCATTCACGAAGGGAGTACCGGACCTGTCGCCAAGTCTTGGTACTCAGAGGGTCACTCGTGGTGGCCTCCATACAAGAAGATAGACAGGGTATTGAGGAGTGTCCGGTTGATGGAGGCACCACAACCAGATAAAGGTTGGACCAAGCATCAGGCCAGAATTCTACACGAGTCAGGTACACAGAAgtacattgtaaataaacaatattaaacaaaGGATAAATTCAATAATATATGACGTTCCATAGACTACTGCATTCATGAATTGTTACATACTTTATTTCTTTCAGCATCTTTTGACAAGATTTCAAAGAAATGGAAACAGGCATGCTACACATCTGACATCTCGGAATCTGAAATGCCTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00058276 False 3939 lncRNA 0.37 1 40497817 40501755
TCONS_00056085 True 866 lncRNA 0.35 4 40497817 40503730

Neighbor

gene id symbol gene type direction distance location
XLOC_029001 NA coding downstream 677 40488564 ~ 40497140 (-)
XLOC_029000 si:dkey-22h13.3 coding downstream 89964 40402017 ~ 40407853 (-)
XLOC_028999 si:dkey-22h13.2 coding downstream 132928 40357513 ~ 40364889 (-)
XLOC_028998 NA coding downstream 478114 40018973 ~ 40019703 (-)
XLOC_028997 si:ch211-215p11.1 coding downstream 488942 39992253 ~ 40008875 (-)
XLOC_029003 si:dkey-57c22.1 coding upstream 21345 40525075 ~ 40536509 (-)
XLOC_029004 NA coding upstream 48429 40552159 ~ 40598742 (-)
XLOC_029005 si:dkey-207m2.4 coding upstream 50974 40554704 ~ 40589579 (-)
XLOC_029006 NA coding upstream 208132 40711862 ~ 40937754 (-)
XLOC_029007 NA coding upstream 253113 40756843 ~ 40757716 (-)
XLOC_028995 CR749167.1 non-coding downstream 667998 39829175 ~ 39829819 (-)
XLOC_028994 NA non-coding downstream 783867 39712778 ~ 39713950 (-)
XLOC_028993 NA non-coding downstream 795631 39643624 ~ 39702186 (-)
XLOC_029008 NA non-coding upstream 322092 40825822 ~ 40828360 (-)
XLOC_029011 BX649394.9 non-coding upstream 394127 40897857 ~ 40897963 (-)

Expression


Co-expression Network