XLOC_029007


Basic Information

Item Value
gene id XLOC_029007
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 40756843 ~ 40757716 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057391
gacctgatggtgctgaaagaagagacacatcaatggaatgaaatagaagagaaacaacaagaaataatgagtgatgaaaaacccacactcactAAAAAGTCTTCATCACACAGAAAACCTTGGAAATCCAAGTCtaggtgtaatttcagctgtaaacagagtagaaagagtttcagtcaaaagccaaaccttgaccacactagggagaaaccttacacctgcaaacagtgtgaaaaaaagcttctataatacaggaaacttaaaagtgcacatgagaattcacactggagagaggccgtacacatgccaacagtgtggaaaaagcttctattctacaggaaacttggcagtgcacagaagaattcacactggagagaggctcTACTCTTGCcgtcagtgtggaaagagttgtaAGCAAAATGGCAACCTTGAAGTCCaaatgagaactcacactggagagagaagcGTTTTTTGCACAGTGTGGGAaaggtttttctcaaaaacaaaaccttacccTCCATAtgaagattcacactggagagaaaccttacacatgcacagagtgtggtaaaagtttcccacATAAAGGCTCACTCCACATGATAGGTCACACCGgacagaagccgtttgcatgtgctcattttggaaagagcttcacaaccaaagaaTCATGAATCACacgaatggtcacactggaaccacagAGTTTACATGTGAtcattgtggaaagagtctctcatgcaaagactccattaagcaacacatgaggattcactcAGGCGAGCGTTttcgatgcagtgagtgtggaaaggtcttcaaacataaaagaagcctcgTCAATCACacaaagcttcacaatggagagaaaaaatga

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057391 True 874 lncRNA 0.42 1 40756843 40757716

Neighbor

gene id symbol gene type direction distance location
XLOC_029004 NA coding downstream 158101 40552159 ~ 40598742 (-)
XLOC_029005 si:dkey-207m2.4 coding downstream 167264 40554704 ~ 40589579 (-)
XLOC_029003 si:dkey-57c22.1 coding downstream 220334 40525075 ~ 40536509 (-)
XLOC_029002 NA coding downstream 253113 40497817 ~ 40503730 (-)
XLOC_029001 NA coding downstream 259703 40488564 ~ 40497140 (-)
XLOC_029008 NA coding upstream 68106 40825822 ~ 40828360 (-)
XLOC_029009 si:dkey-285e18.5 coding upstream 88767 40846483 ~ 40854534 (-)
XLOC_029010 zgc:174650 coding upstream 122717 40880433 ~ 40883162 (-)
XLOC_029011 BX649394.9 coding upstream 140141 40897857 ~ 40897963 (-)
XLOC_029012 BX649394.13 coding upstream 140668 40898384 ~ 40898490 (-)
XLOC_028998 NA non-coding downstream 737140 40018973 ~ 40019703 (-)
XLOC_028995 CR749167.1 non-coding downstream 927024 39829175 ~ 39829819 (-)
XLOC_029013 BX649394.2 non-coding upstream 148052 40905768 ~ 40905874 (-)
XLOC_029014 BX649394.14 non-coding upstream 149639 40907355 ~ 40907461 (-)

Expression


Co-expression Network