XLOC_029008


Basic Information

Item Value
gene id XLOC_029008
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 40825822 ~ 40828360 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00057392
ACCTCTGCAGCTGACTTTGATTTCAGAGGATAAGCCTGGGCTCATTTGGTGCAATAATCAACTATTACACATATGTACTGATTGTTCTGGTCAGACTTCACCACCTTTCCAATAAGGTCCATTCCAACCAGTTCAAATGGACACTTGGTCTGTCATCAGACAAGAACAgaattattttcacatttatcaacaaaactgagaaaaaaaatacataacaaTCATCAATCAATTTAAATAAGCCCTTACTAAGGAAAAGGCCTTGTTTTTTTTATGCTTACCTTATGTAGTACTGCTAGAGAGTTGTGTCTAACACTTAAAAAATCACTTAAACTGAAAAGACCATAGCTTGTTcatgcttaaattattattattttttttcagattcaGGGAAGGTCTGGAATGTTTGCATCTTCTGCAACATTTGGAAAAACATCCAAGTCTCTTTTGAGAAATTTTGATGTTTAAAGAGAAGCCACTGACAGCAAAAGACTTAGCGGAGCTCTTCATCCCGTAGCTGTCACCAGTTGGCACTAACAAAAGGACCCTAGAAAACAGGATTGTTTGTTTCTGGAGGGACTGGCTTCTAGATGTGGAagAGGGAGCATCGTCACCACTTTCTTTAAGCCAGGTTTTGGCATTTGCTTCAGGTTCAACCTCCATTCAGAGGCTGGGTTTCCCTGTTGAACCAGCACTTGAGTTCCTGCATCAACAGGATAATGAGCATGCCAAAATTTACCCTGAAGCAAATACATGTACTATTGTTTTGAGGCTGCCAATGCATCGAATGTTTGAGGACTTTGAAATTTACATGAAAGAGGGCATTTTGCGGGCCCCCACATTTGGGGTAATGTAGTTCAGTTAATGGCAACCCCATTgtatattgttctttttttgtgtCCAGTGTTCTTTGCAACCCTATTTTATATTGTTCTTTTTAGTTTCTAGAGTTCTTTGCAACCCCATTGTATATTGTTCTTTTTAGTTTCTAGTGTTCTTTGtcatgtaaaaacattttttgtgtagTAATTGTGGTAAATAAAATACTTTGTTCATAGCACCTGCTGTTTTTGTGTAcactaaaaaatttaattttgtgtttaagCACTCAA
>TCONS_00058279
GCTGTCACCAGTTGGCACTAACAAAAGGACCCTAGAAAACAGGATTGTTTGTTTCTGGAGGGACTGGCTTCTAGATGTGGAaggtaataaatatacaattggtTATATCAGAGGTCTTCAACCTTGTTCCTGGTATCCTGTAAAGTTTATTTCCAACCGGATTTAGTGCACCTGACTACAATTTTCAAGCTGTCTTGGGGAGCTTAATTGGCcactttaggtgtgtttgataagggttgcagaTAAACTCTGAGATAAGGAGTCCCCAAGAACAGGGTTGAAAACCACTAGGTTATATTAGGGTcttctcacactatgctatccgaacggtgcccaggctcgtttcccggatcgtttttgaagtgtgagtgcgctgaatcgggaaGAGGTGGGCcagtgcttgtgtgtgagtgcaaaacgcgccaaagcctgaaactgaaagcctGAAACTGACGTGACTTATAAGgcactgtttgatatggatttattaatcattcttgctATTCAGTGAAGGCaaactgttgtagattattaaagaccctcactgcacgacagctgcacctttagcaaacctcataatagggtatatgccgagctaatgTTGTTCCTATACTGACAAACTTCCAGTGACCTtttattgtaagttttttttttccattttatgtgGTCCCCTTTACAGCATCGATCAAAAGTGGCTAATCTGTTctacaaaatatttgactgtgtcactgcatatcaaatgactaaaacgatataactgaagaaatcacctctgtgctgagcgaaagtGCTTACTAAGCAgcacagcatcgatgatgtaagcatgcccaggcttgaatgtaatgtgagtgcgggccatcgggggagacgggagggggacaagcgtgctttggcccggttcaaggcaactgtacatagtgtgagtacggccttatacATGGTTTACACTCTGTAACATTATACAATTGTTATGTGCTTTCTTTCCTCTCCAATGTCTTTTTTAAAGGTTGCCAGCCACCACCAGTGTTTTGAATGATTTTCATCTAATTTTCATGACCCCCACAATATTTTGTTGCACGAATATCtgcacaaaaaatatttcaaaatagacACCAGATGTTCTGCttttacactaaaaaaaaacttattctaGCTTCATGTATTACATGGTTATAGGTGTGGTTATAatcacatatataaaaaataaaattaaattgattctgtctttttttctttagttCTTTGATGTTTGTGATACATTATTAGTTCATGACATTATAAGTCCATAGATTGCTATAGAAACAGTGTTTTATGAGCACATATGACTGCACATAAGTACTGACTGTTCCAatctaaaaacaaattaaaattgatcatgatCAGAGCAATCATAAACAAAATTTGTTACATAATAAATGCCTACTGAAGTGGTTATGGTTTTTTGTAAGaatatccatatttaaaattaaatgaaaacctgaataatctttttatttttatctttttttctcagAGGGAGCATCGTCACCACTTTCTTTAAGCCAGGTTTTGGCATTTGCTTCAGGTTCAACCTCCATTCAGAGGCTGGGTTTCCCTGTTGAACCAGCACTTGAGTTCCTGCATCAACAGGATAATGAGCATGCCAAAATTTACCCTGAAGCAAATACATGTACTATTGTTTTGAGGCTGCCAATGCATCGAATGTTTGAGGACTTTGAAATTTACATGAAAGAGGGCATTTTGCGGGCCCCCACATTTGGGGTAATGTAGTTCAGTTAATGGCAACCCCATTgtatattgttctttttttgtgtCCAGTGTTCTTTGCAACCCTATTTTATATTGTTCTTTTTAGTTTCTAGAGTTCTTTGCAACCCCATTGTATATTGTTCTTTTTAGTTTCTAGTGTTCTTTGtcatgtaaaaacattttttgtgtagTAATTGTGGTAAATAAAATACTTTGTTCATAGCA

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0045786 negative regulation of cell cycle biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003730 mRNA 3'-UTR binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00057392 False 1109 lncRNA 0.37 2 40825822 40828360
TCONS_00058279 True 1974 lncRNA 0.38 1 40825874 40827847

Neighbor

gene id symbol gene type direction distance location
XLOC_029007 NA coding downstream 68106 40756843 ~ 40757716 (-)
XLOC_029004 NA coding downstream 227080 40552159 ~ 40598742 (-)
XLOC_029005 si:dkey-207m2.4 coding downstream 236243 40554704 ~ 40589579 (-)
XLOC_029003 si:dkey-57c22.1 coding downstream 289313 40525075 ~ 40536509 (-)
XLOC_029002 NA coding downstream 322092 40497817 ~ 40503730 (-)
XLOC_029009 si:dkey-285e18.5 coding upstream 18123 40846483 ~ 40854534 (-)
XLOC_029010 zgc:174650 coding upstream 52073 40880433 ~ 40883162 (-)
XLOC_029011 BX649394.9 coding upstream 69497 40897857 ~ 40897963 (-)
XLOC_029012 BX649394.13 coding upstream 70024 40898384 ~ 40898490 (-)
XLOC_029013 BX649394.2 coding upstream 77408 40905768 ~ 40905874 (-)
XLOC_029001 NA non-coding downstream 328682 40488564 ~ 40497140 (-)
XLOC_028998 NA non-coding downstream 806119 40018973 ~ 40019703 (-)
XLOC_029014 BX649394.14 non-coding upstream 78995 40907355 ~ 40907461 (-)
XLOC_029015 BX649394.6 non-coding upstream 83503 40911863 ~ 40911969 (-)

Expression


Co-expression Network