XLOC_029009 (si:dkey-285e18.5)


Basic Information

Item Value
gene id XLOC_029009
gene name si:dkey-285e18.5
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 40846483 ~ 40854534 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00056092
GCTCTTGCGCtggattcagctggagaaaggataaagtgtccaaacacagagaaaaaaatcctgctgaagcgactgatctccacactgttatgaagatggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagacctaattaaagactACGATGAGAGTaaagaggaacatcatgtcaaaattgaggacaaaactcatttagtgactgatgatattttaaaagtgagagacaagagttgtttaacctgcactcagtgtggaaagagtttggcaagcaaaagcaaactaaagactcacatgaggattcacactggagagaaaccattcacatgctatCAAtatgggaagagtttcagcaaatcatcactTTATAGACACAAGAAGATCCACACCGGTAAAAAaacattcacttgcactcagtgtgggaagagttttaactgctcatcacaccttaatcaacacatcaggatccacactggagagaaaccattcagatgcactcagtgtgggaagagttttaactgctcatcacaccttaatgaacacatgatgatccacactggagagaaaccattcacatgcactcagtgtgggaagagttttagcaaatcatcgtcgctttatagacacatgaagatccacactggagaaaaaccattcacttgcactgagtgtaggaagagtttcagccaatcatcatcccttaatctacacatgaggatccacactggagagaaaccattcacatgcactgagtgtgggaacagtttcagtaaatcatcatcgctttatagacacatgaagatccacaccggagaaaaaCCTTTCACTTgcactgagtgtgggaagagtttcatccaatcATCATGCCTTAAtgtacacatgaggatccacactggagagaaacctttcacatgcactcagtgtgggaagagtttcatccactcatcacaccttaatcaacacctcatgatccacactggagagaaaccattcaaatgccctcagtgtgggaagagttttagccaatcataccttaaaaaacacatgaagattcacactggtgtgagagagtatatgtgcttggagtgtgagaagacttttattacagctgcagaATTGAAACGGCACAAGAGGatacacactggagaaaaaccgtacaagtgttcacagtgcagtaagaggtttgctcactcaggaaccctgaaaacacatgagaggattcacactggagagaaactgtacaagtgttcacactgcagtaagaggtttgctcactcaggaaccctgaaagcacaccagaggattcacactggagataaACTGTAGACGTGATCAGTGTGTATTAGGGTTGGTTaacgaaacccggtgccattttAGCACCGCTACCTTGGTAACTGGTATGTATTGGTattaaat
>TCONS_00057393
atgggaagagtttcagcaaatcatcactTTATAGACACAAGAAGATCCACACCGGTAAAAAaacattcacttgcactcagtgtgggaagagttttaactgctcatcacaccttaatcaacacatcaggatccacactggagagaaaccattcagatgcactcagtgtgggaagagttttaactgctcatcacaccttaatgaacacatgatgatccacactggagagaaaccattcacatgcactcagtgtgggaagagttttagcaaatcatcgtcgctttatagacacatgaagatccacactggagaaaaaccattcacttgcactgagtgtaggaagagtttcagccaatcatcatcccttaatctacacatgaggatccacactggagagaaaccattcacatgcactgagtgtgggaacagtttcagtaaatcatcatcgctttatagacacatgaagatccacaccggagaaaaaCCTTTCACTTgcactgagtgtgggaagagtttcatccaatcATCATGCCTTAAtgtacacatgaggatccacactggagagaaacctttcacatgcactcagtgtgggaagagtttcatccactcatcacaccttaatcaacacctcatgatccacactggagagaaaccattcaaatgccctcagtgtgggaagagttttagccaatcataccttaaaaaacacatgaagattcacactggtgtgagagagtatatgtgcttggagtgtgagaagacttttattacagctgcagaATTGAAACGGCACAAGAGGatacacactggagaaaaaccgtacaagtgttcacagtgcagtaagaggtttgctcactcaggaaccctgaaaacacatgagaggattcacactggagagaaactgtacaagtgttcacactgcagtaagaggtttgctcactcaggaaccctgaaagcacaccagaggattcacactggagataaACTG

Function

symbol description
si:dkey-285e18.5 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000093665

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00056092 False 1466 mRNA 0.42 3 40846483 40854534
TCONS_00057393 True 986 lncRNA 0.43 1 40846576 40847561

Neighbor

gene id symbol gene type direction distance location
XLOC_029008 NA coding downstream 18123 40825822 ~ 40828360 (-)
XLOC_029007 NA coding downstream 88767 40756843 ~ 40757716 (-)
XLOC_029004 NA coding downstream 247741 40552159 ~ 40598742 (-)
XLOC_029005 si:dkey-207m2.4 coding downstream 256904 40554704 ~ 40589579 (-)
XLOC_029003 si:dkey-57c22.1 coding downstream 309974 40525075 ~ 40536509 (-)
XLOC_029010 zgc:174650 coding upstream 25899 40880433 ~ 40883162 (-)
XLOC_029011 BX649394.9 coding upstream 43323 40897857 ~ 40897963 (-)
XLOC_029012 BX649394.13 coding upstream 43850 40898384 ~ 40898490 (-)
XLOC_029013 BX649394.2 coding upstream 51234 40905768 ~ 40905874 (-)
XLOC_029014 BX649394.14 coding upstream 52821 40907355 ~ 40907461 (-)
XLOC_029002 NA non-coding downstream 342753 40497817 ~ 40503730 (-)
XLOC_029001 NA non-coding downstream 349343 40488564 ~ 40497140 (-)
XLOC_029015 BX649394.6 non-coding upstream 57329 40911863 ~ 40911969 (-)

Expression


Co-expression Network