XLOC_029010 (zgc:174650)


Basic Information

Item Value
gene id XLOC_029010
gene name zgc:174650
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 40880433 ~ 40883162 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00056093
gtaTGACGTCATTAGGCTGCGTCGCTTCCGCGCTGCAGTTTAACTGGAGGAAGgataaagtgtccaaacgcagtgAAAAGCTCCTGCTGAAAcaactgatctccacactgttttaaagatggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagacctaattgaagagaatgaggggagtaaagaggaggaacatcatgtcaaaattgaggaaaaaactcatttacagactgatgatattttgaaaaggggagacaaaaatagtttcacctgcactcagtgtggaaagagttttggaagaaaaggctatcttaagattcacatgatgatccacactagagagaaaccattcacatgcactcattgtgggaggagttttggaagaaatttcggtcttaagattcacatgatgatccacactggagagaaaccattcacatgcacacattgtgggaagagttttagccaatcatcacaccttaatcaacacatgaggatccacactagagagaaaccattcacatgcactcagtgtgggaagagtttcagccgatcatcacaccttaatgaacacatgatgattcatagcagaaagaaaccattcacatgcactcagtgtgggaagagttttggaagaaatttcggtcttaagattcacatgaggatccacactggagagaacccATTCACATGCACGCATTGTGGGAAGAGatttagccaatcatcatcccttaatcaacacatgaggatccacactggagagaaaccattcacatgcattcagtgtgggaagagtttcaaacaatcatcatccctttataATCACAAgaagatccacactagagagaaacccttTACTTGCACCCAGTGTGGAAAGACCTATAACTattcatcacaccttaatgaacatatgaggattcacactagagagaaaccattcacttgcactcagtgagggaagagtttcatccgCTCATCATCCCTTTATCTACACATTATGAGCCACACTTGAAAGAAACTTGCACTTAAGCCGCGGTCACattggacttttctccccatggATTTCCATTCATAAGCACgggaatgcgtcagaccggaaaccaagtttgtgcatcaagtttcgcagttcactgcattgcaaagttcaagcttggtgaactctgacctgcaaaatcgcatcacttgactg
>TCONS_00056094
atggcgtttattaaagaggagagtgaagatgtgaagattgaagaaacattcacagtcaaacaggaagatctgcaggaacaaacagacctaattgaagagaatgaggggagtaaagaggaggaacatcatgtcaaaattgaggaaaaaactcatttacagactgatgatattttgaaaaggggagacaaaaatagtttcacctgcactcagtgtggaaagagttttggaagaaaaggctatcttaagattcacatgatgatccacactagagagaaaccattcacatgcactcattgtgggaggagttttggaagaaatttcggtcttaagattcacatgatgatccacactggagagaaaccattcacatgcacacattgtgggaagagttttagccaatcatcacaccttaatcaacacatgaggatccacactagagagaaaccattcacatgcactcagtgtgggaagagtttcagccgatcatcacaccttaatgaacacatgatgattcatagcagaaagaaaccattcacatgcactcagtgtgggaagagttttggaagaaatttcggtcttaagattcacatgaggatccacactggagagaacccATTCACATGCACGCATTGTGGGAAGAGatttagccaatcatcatcccttaatcaacacatgaggatccacactggagagaaaccattcacatgcattcagtgtgggaagagtttcaaacaatcatcatccctttataATCACAAgaagatccacactagagagaaacccTTGCACCCAGTGTGGAAAGACCTATAA

Function

symbol description
zgc:174650 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080219-10 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated.

Ensembl:

ensembl_id ENSDARG00000098510

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00056093 False 1237 mRNA 0.42 3 40880433 40883162
TCONS_00056094 True 810 mRNA 0.41 3 40880737 40882630

Neighbor

gene id symbol gene type direction distance location
XLOC_029009 si:dkey-285e18.5 coding downstream 25899 40846483 ~ 40854534 (-)
XLOC_029008 NA coding downstream 52073 40825822 ~ 40828360 (-)
XLOC_029007 NA coding downstream 122717 40756843 ~ 40757716 (-)
XLOC_029004 NA coding downstream 281691 40552159 ~ 40598742 (-)
XLOC_029005 si:dkey-207m2.4 coding downstream 290854 40554704 ~ 40589579 (-)
XLOC_029011 BX649394.9 coding upstream 14695 40897857 ~ 40897963 (-)
XLOC_029012 BX649394.13 coding upstream 15222 40898384 ~ 40898490 (-)
XLOC_029013 BX649394.2 coding upstream 22606 40905768 ~ 40905874 (-)
XLOC_029014 BX649394.14 coding upstream 24193 40907355 ~ 40907461 (-)
XLOC_029015 BX649394.6 coding upstream 28701 40911863 ~ 40911969 (-)
XLOC_029002 NA non-coding downstream 376703 40497817 ~ 40503730 (-)
XLOC_029001 NA non-coding downstream 383293 40488564 ~ 40497140 (-)

Expression


Co-expression Network