Fish Transcriptome and Expression Database

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model fish

XLOC_029016 (BX649394.15)

Basic Information

Item	Value
gene id	XLOC_029016
gene name	BX649394.15
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007115.7
NCBI id	CM002888.2
chromosome length	78093715
location	40913453 ~ 40913559 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00056100
gtgcttgctacggtggcacatatactaaaattggattgatacagagaagattagcatggcccctgcgaaaggatgacacgcaaatccgtgaagtgcTCCATgatgct

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000116425

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00056100	True	107	snRNA	0.47	1	40913453	40913559

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_029015	BX649394.6	coding	downstream	1484	40911863 ~ 40911969 (-)
XLOC_029014	BX649394.14	coding	downstream	5992	40907355 ~ 40907461 (-)
XLOC_029013	BX649394.2	coding	downstream	7579	40905768 ~ 40905874 (-)
XLOC_029012	BX649394.13	coding	downstream	14963	40898384 ~ 40898490 (-)
XLOC_029011	BX649394.9	coding	downstream	15490	40897857 ~ 40897963 (-)
XLOC_029017	BX649394.11	coding	upstream	1480	40915039 ~ 40915145 (-)
XLOC_029018	BX649394.7	coding	upstream	2007	40915566 ~ 40915672 (-)
XLOC_029019	BX649394.4	coding	upstream	2537	40916096 ~ 40916202 (-)
XLOC_029020	BX649394.8	coding	upstream	3062	40916621 ~ 40916727 (-)
XLOC_029021	BX649394.1	coding	upstream	4119	40917678 ~ 40917784 (-)

Expression

Co-expression Network