Fish Transcriptome and Expression Database

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model fish

XLOC_029017 (BX649394.11)

Basic Information

Item	Value
gene id	XLOC_029017
gene name	BX649394.11
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007115.7
NCBI id	CM002888.2
chromosome length	78093715
location	40915039 ~ 40915145 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00056101
gtgcttgctacggtggcacatatactaaaattggatcgatacagagaagattagcatggcccctgcgaaaggatgacacgcaaatccgtgaagcgctccatattgct

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000113996

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00056101	True	107	snRNA	0.48	1	40915039	40915145

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_029016	BX649394.15	coding	downstream	1480	40913453 ~ 40913559 (-)
XLOC_029015	BX649394.6	coding	downstream	3070	40911863 ~ 40911969 (-)
XLOC_029014	BX649394.14	coding	downstream	7578	40907355 ~ 40907461 (-)
XLOC_029013	BX649394.2	coding	downstream	9165	40905768 ~ 40905874 (-)
XLOC_029012	BX649394.13	coding	downstream	16549	40898384 ~ 40898490 (-)
XLOC_029018	BX649394.7	coding	upstream	421	40915566 ~ 40915672 (-)
XLOC_029019	BX649394.4	coding	upstream	951	40916096 ~ 40916202 (-)
XLOC_029020	BX649394.8	coding	upstream	1476	40916621 ~ 40916727 (-)
XLOC_029021	BX649394.1	coding	upstream	2533	40917678 ~ 40917784 (-)
XLOC_029022	BX649394.12	coding	upstream	3058	40918203 ~ 40918309 (-)

Expression

Co-expression Network