G1019913


Basic Information

Item Value
gene id G1019913
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 77542344 ~ 77552131 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1160195
GCCGggttcaatcaaatcaaatttattcatgaagcccttcttacatcagctgatgtcacaaagtgatgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagtacggtggctaggaaaaactccctagaaaggccagaacctaggaagaaacctagagaggacaaGAGGAGCCTAGTATTCAGTTCAGGAGAATGAGAAAGACATGTAACAGATGAGGGGTCAGAcaatggaggaggaggtcttgctACTCTAGCTGAGCATTGTGGGCTTACAGTAGTTGATGGAGGGGCTCTACTCTAGGCTAGGGGCTCCAGGGTGTAGGACTAGTACAGTGTCTACTGTTGAGGCTCTAGGGTGTAGGAGTAGTTCAGGATCTACTGTAGAGGCTCGAGGGTGTAGGAGTAGTTCAGGATCCCACCCTTCTTGAGGAAACATTGATGTTTCCAAGTTCCGATCTTGATGGAGCGCTCGCAGGTCCCCAGCAGGTCGTTGGAGTTGATGTCGCTGTCGTACACCTCCAACCTCAAGATGTTGTTCTCATGGGCGTTGAGGAAGCTGAACTCCTCGTTCCAGCTGGGGTCATGGTTGTTGTTCTTCACCTCTGTCCTCCCGAGAAAGCCGTAAGCTCTGAACTCCTCCTTCCAGCTGGGGTCATGGTTGTTGTTCTTCACCTCTGTCCTCCCGAGAAAGCCGTAAGCTCTGAACAC
>TU1160196
GCCGggttcaatcaaatcaaatttattcatgaagcccttcttacatcagctgatgtcacaaagtgatgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagtacggtggctaggaaaaactccctagaaaggccagaacctaggaagaaacctagagaggacaaGAGGAGCCTAGTATTCAGTTCAGGAGAATGAGAAAGACATGTAACAGATGAGGGGTCAGAcaatggaggaggaggtcttgctACTCTAGCTGAGCATTGTGGGCTTACAGTAGTTGATGGAGGGGCTCTACTCTAGGCTAGGGGCTCCAGGGTGTAGGACTAGTACAGTGTCTACTGTTGAGGCTCTAGGGTGTAGGAGTAGTTCAGGATCTACTGTAGAGGCTCGAGGGTGTAGGAGTAGTTCAGGATCCCACCCTTCTTGAGGAAACATTGATGTTTCCAAGTTCCGATCTTGATGGAGCGCTCGCAGGTCCCCAGCAGGTCGTCGAAGAGCACGTCACTGTCGTACACCTCCAACCTCAAGATGTTGTTCTCACGGGCGTTGAGGAAGCTGAACTCCTCCTTCCAGCTGGGGTCATGGTTGTTGTTCTTCACCTCTGTCCTCCCGAGAAAGCCGTAAGCTCTGAACAC

Function

NR:

description
perforin-1-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1160195 False 725 lncRNA 0.50 2 77542344 77552131
TU1160196 True 653 lncRNA 0.50 2 77542344 77552131

Neighbor

gene id symbol gene type direction distance location
LOC118937407 LOC106570835 coding downstream 10460 77529680 ~ 77531884 (-)
LOC110536424 LOC106570873 coding downstream 26414 77481872 ~ 77515930 (-)
LOC118937408 LOC106570885 coding downstream 67322 77468296 ~ 77475022 (-)
LOC110536422 LOC106570884 coding downstream 78567 77462329 ~ 77463777 (-)
LOC110536421 LOC106570882 coding downstream 149215 77389780 ~ 77393129 (-)
fam151b fam151b coding upstream 53037 77605168 ~ 77618259 (-)
ccdc125 ccdc125 coding upstream 66967 77619098 ~ 77644804 (-)
rad17 rad17 coding upstream 93831 77645962 ~ 77659863 (-)
erap1b LOC106570844 coding upstream 148802 77700933 ~ 77725921 (-)
LOC110535124 LOC106570849 coding upstream 207798 77759929 ~ 77778022 (-)
G1019907 NA non-coding downstream 6788 77535280 ~ 77535556 (-)
G1019904 NA non-coding downstream 19417 77522684 ~ 77522927 (-)
G1019898 NA non-coding downstream 41239 77500653 ~ 77501105 (-)
G1019894 NA non-coding downstream 63723 77478095 ~ 77478621 (-)
G1019858 NA non-coding downstream 113519 77420692 ~ 77428825 (-)
G1019925 NA non-coding upstream 20427 77572558 ~ 77573473 (-)
G1019926 NA non-coding upstream 23740 77575871 ~ 77576664 (-)
G1019939 LOC106570875 non-coding upstream 43535 77595666 ~ 77598190 (-)
G1019938 NA non-coding upstream 46353 77598484 ~ 77599834 (-)
G1019413 NA other downstream 585527 76955366 ~ 76956817 (-)
G1019056 NA other downstream 996603 76545108 ~ 76545741 (-)
ckap2l LOC106570813 other downstream 1295457 76202025 ~ 76246958 (-)
G1018159 NA other downstream 2173518 75368448 ~ 75368826 (-)
G1017417 NA other downstream 2651204 74890399 ~ 74891140 (-)
LOC110536450 LOC106570886 other upstream 933030 78485116 ~ 78487202 (-)
G1021084 NA other upstream 1001497 78553628 ~ 78566847 (-)
G1021129 NA other upstream 1081490 78633621 ~ 78634401 (-)

Expression


Co-expression Network