G1020232


Basic Information

Item Value
gene id G1020232
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 77626634 ~ 77664521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1160568
GCATTTGTATTCTTTATTATGTTGTTCCACCATCATTCCTTCCTTGTACAGTATAAAGCTTTAGCCATACAAAAACGACCACTGTCTACtgataaaacctgtgagtatttCATGGAAATACTAGCGGTATGAGGACAAAATTAAACGTTTCATGCATCTTTTCTTAAATAAAATGGAAATATGAAAcctaaaatgaaaaacaaaataaaaaaataaacttctGGCAAAAACACAATTCCTGCATTATGGCCTGTGTTGTTGAAATCTGAATGACATGACTAGGTTTATGGCTACCAATgtccacaagaacaca
>TU1160567
GCATTTGTATTCTTTATTATGTTGTTCCACCATCATTCCTTCCTTGTACAGTATAAAGCTTTAGCCATACAAAAACGACCACTGTCTACtgataaaacctgtgagtatttCATGGAAATACTAGCGGTATGAGGACAAAATTAAACGTTTCATGCATCTTTTCTTAAATAAAATGGAAATATGAAAcctaaaatgaaaaacaaaataaaaaaataaacttctGGCAAAAACACAATTCCTGCATTATGGCCTGTGTTGTTGAAATCTGAATGACATGACTAGGTTTATGGCTACCAATGTCCACAAGAAATGATGAATTTAAAAGATAATACaattcaaaaataaaaaataaatgtaaaacaaaaaacacatttaaccaaaaggcatgttttttttgttatgtAGATAAACCATTGCAATGCAATAAATGCAAAATAAATTGTAAATCGGTTTTAAATCAATCTATGCCACAAGAAAATGCAGCATGCATCTAACTAACTAACACATTCAATTTTGCCCATCCTTAAGACTCTAAAATGACAAAACATTTCCCTTAGGAGAGTAGAGATATAGTGACGCATGCATTTGGGCTTGAATACTGCCCAAATCTTGTGATGACATGGTGTTTCATGACATCTAGCTTGTCCATGAACAGCTCTTGCAACACAAGTCAGTATCCAAACATGCTTACTGCCCTAGCTTTCATCCTAAATGAAGGTGTGGTTAACCATACAGTCCAAGCAGGGAATAAACACAGCCAACGGGTGCATCTCAACTGACACCAGCTACCACATATAGTGCACTATCGTCGACCAGTGTGCTAGGCCCtgatcaaaattagtgcactatatagcgaacAGGCTACCATTTGAGACCTAGATATTTATTATCATTCCACTGGGCTACTCAGTGAGGTAACCACGCTTGTCCAGGTCTTAGACTGTAAACATGTCTACAATAGAGAGTGTATTGTTTACCAATTTTATGTCATCAATGTTGTCAACTATGCTAGATGAATTTCGTTTTCAGACCCGGGGCATATTTTTGTTCCAGTCCAAGACTATCACACCCATTTCAACAACTCAATGATTGGTTGATCAATTCAGAATCGGGTGTGATACATGTTGTGCTCGAACCAAAACCAGGACCAGGACTTAAAGCCTCAGTACTATCCTAGTATGTGTGTGATTGCTATAAGTTAAAggcatatagatttttttttttttttttttttcaacaaacATAAAGAGTCCATTGGTATGTTTTTTTTCTAGTATGAAGAAGATTCCAGCCATGCACTGTTTTGGTTTCTAGGGTTTGTGTCCATGCTAGTTGTTGTCCTTCACCCACTGCTCGATCCACTGGACTACCTGCTCCAGGTTACGCTCCAGGTCCTCAGGCTCGTTGCTGGGCAACTGGTGGACAATCTCCTCCTTGTAGGCCTCCATGGCCTCCTCGTAGATGGTCTGGAAGATCTCACACTGGACATTGTCCTGCAATTTCTTCCCTGTG

Function

NR:

description
RNA polymerase II TATA box binding protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1160568 False 313 lncRNA 0.33 2 77626634 77664521
TU1160567 True 1512 lncRNA 0.38 2 77662947 77664521

Neighbor

gene id symbol gene type direction distance location
fam151b fam151b coding downstream 8375 77605168 ~ 77618259 (-)
LOC118937407 LOC106570835 coding downstream 94750 77529680 ~ 77531884 (-)
LOC110536424 LOC106570873 coding downstream 110704 77481872 ~ 77515930 (-)
LOC118937408 LOC106570885 coding downstream 151612 77468296 ~ 77475022 (-)
LOC110536422 LOC106570884 coding downstream 162857 77462329 ~ 77463777 (-)
erap1b LOC106570844 coding upstream 36412 77700933 ~ 77725921 (-)
LOC110535124 LOC106570849 coding upstream 95408 77759929 ~ 77778022 (-)
LOC118936501 LOC106570849 coding upstream 113540 77778061 ~ 77821554 (-)
LOC110536447 LOC106570860 coding upstream 750272 78414793 ~ 78433486 (-)
LOC110536449 LOC106570861 coding upstream 804012 78468533 ~ 78476320 (-)
ccdc125 ccdc125 non-coding downstream 1091 77619098 ~ 77644804 (-)
G1019938 NA non-coding downstream 26800 77598484 ~ 77599834 (-)
G1019939 LOC106570875 non-coding downstream 28444 77595666 ~ 77598190 (-)
G1019926 NA non-coding downstream 49970 77575871 ~ 77576664 (-)
G1019925 NA non-coding downstream 53161 77572558 ~ 77573473 (-)
G1020271 NA non-coding upstream 29736 77694257 ~ 77694488 (-)
G1020273 LOC100196672 non-coding upstream 32380 77696901 ~ 77697948 (-)
G1020291 naaladl1 non-coding upstream 73470 77737991 ~ 77739799 (-)
G1020296 NA non-coding upstream 83905 77748426 ~ 77748732 (-)
G1020297 NA non-coding upstream 84856 77749377 ~ 77749658 (-)
G1019413 NA other downstream 669817 76955366 ~ 76956817 (-)
G1019056 NA other downstream 1080893 76545108 ~ 76545741 (-)
ckap2l LOC106570813 other downstream 1379747 76202025 ~ 76246958 (-)
G1018159 NA other downstream 2257808 75368448 ~ 75368826 (-)
LOC110536450 LOC106570886 other upstream 820640 78485116 ~ 78487202 (-)
G1021084 NA other upstream 889107 78553628 ~ 78566847 (-)
G1021129 NA other upstream 969100 78633621 ~ 78634401 (-)
G1021664 NA other upstream 1757989 79422510 ~ 79423479 (-)
G1021853 NA other upstream 2040698 79705219 ~ 79705722 (-)

Expression


Co-expression Network