Fish Transcriptome and Expression Database

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model fish

XLOC_002902 (BX510654.1)

Basic Information

Item	Value
gene id	XLOC_002902
gene name	BX510654.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007121.7
NCBI id	CM002894.2
chromosome length	45420867
location	34327262 ~ 34327394 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005358
TCAGGCATTAAACATAGACGACCCATTGGGGTTCTCCTAAGCGGACTTGATTGCAGGGTGGACTCAATTTCTTACCACACCAGcacagtacctggatgggagaccgcatgggaacactaggttgctgccggac

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000099228

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00005358	True	133	rRNA	0.53	1	34327262	34327394

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_002901	pimr167	coding	downstream	83993	34220492 ~ 34243269 (-)
XLOC_002898	pimr145	coding	downstream	103695	34171674 ~ 34223567 (-)
XLOC_002899	pimr148	coding	downstream	126512	34187231 ~ 34200750 (-)
XLOC_002900	NA	coding	downstream	128696	34196782 ~ 34198566 (-)
XLOC_002897	pimr150	coding	downstream	176590	34120543 ~ 34150672 (-)
XLOC_002903	dclk1a	coding	upstream	409928	34737322 ~ 34871737 (-)
XLOC_002904	ccdc169	coding	upstream	544801	34872195 ~ 34889053 (-)
XLOC_002905	sparta	coding	upstream	561934	34889328 ~ 34916208 (-)
XLOC_002906	CT573139.2	coding	upstream	623666	34951060 ~ 34959178 (-)
XLOC_002907	smad9	coding	upstream	633357	34960751 ~ 35002731 (-)
XLOC_002891	BX569785.1	non-coding	downstream	446898	33876131 ~ 33880364 (-)
XLOC_002890	NA	non-coding	downstream	662473	33663165 ~ 33664789 (-)
XLOC_002885	dre-mir-130a	non-coding	downstream	950048	33377130 ~ 33377214 (-)
XLOC_002884	dre-mir-301a	non-coding	downstream	950176	33377001 ~ 33377086 (-)
XLOC_002909	NA	non-coding	upstream	726887	35054281 ~ 35058444 (-)
XLOC_002912	BX465844.1	non-coding	upstream	832616	35160010 ~ 35164291 (-)
XLOC_002917	NA	non-coding	upstream	985498	35312892 ~ 35321637 (-)
XLOC_002919	NA	non-coding	upstream	1102110	35429504 ~ 35431655 (-)

Expression

Co-expression Network