G1021063 (ube2l3)


Basic Information

Item Value
gene id G1021063
gene name ube2l3
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 78573831 ~ 78578346 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1161562
ACCAAATGGTTAGCCATCTTTATTATGAAACATTGGACTGAATCACACAGCTGTTACACCctactggcagacagacagctcagtgtAAGGTACCTGTTACATAGGACCACTGTCACTGTGAGGTAAATCAGTCTGTGTcaaaaaatggcaccctatttcctgtatagcacactactttagaccagagccctatatagggcactactatagaccagagccctattccctatatagcgcactactatagaccagagccctatatagtgcactacaatagaccagcgccctattccctatatagcacactactatagaccagagccctattccctatatagcgcactgcGTATGAACACAGCACATAAGTGCCCTACAATTTGGCCAGAAccctaaagggaatagggtgccattttggactcaaCTTCAGTCCCCTGGTGTTGCCCCAATCAGGTCTGACCCTTCACTAAGACCTGGGGGGGCTGTTCTGTTCCAGTGGCTATATCAGCCACTGAGATATACATATATACGTGTGAGTTAGTCTCTCCGTGATGACAAATAAGATTTGGTTCACGGTGACAAGATTATATTTATGTAGAGAGGAAGGAGGTGGGGGTTCCGATTTTGAAATGTGTATGTGACGTTTGACAATACGGGTGGGAGTGATGATGATGAGCGGACTGGATAACAGACTTACAGCCATATGTGAGGAGTCAGAACTATCATTTTAACTTCCACACTTTGTCTTGAGCAGACTGCAGTGGGTGGGGTACACAGCCGACCTTACAAAACACAGAGGGAGATAACCAAAAGTATTTCAGAAGGAAGTCTCAGAATGCAAATGGAGAAAATATGTCCAATGCAAAGAGGGGCATCCTCGTAAACAGAAAATAATGGAAACTGAAGTACATTGAGTATTCTTCCGTTTTCCAATCCTAAAAAAAAAAGGCATTTTGGACCAGTGGGGAGAAAAACAGACAATTATCACCAGTCAATTACACTTGTAACCGATGACAATATTGGCTTATTGAATGGGTTGCCATTTTGTTTCTGTCTGCTCAGTGGACTGGCTTCAAACTGAGGGGGATGGACAACGGCTTGTTCCACAGAACACAGTGCAACTACAGAAGCAGAGAAGTCCGAAGGGAAAAACATTTCAGCACACACTTCCAGGGCCTAGCTAACATTTCAGCACACACTTCCAGGGCCTAGCTAACATTTCAGCACACACTTCCAGGGCCTAGCTAACGTTTCATTTTGGGGTGTGACAAAACCAAGGTGAGACAAGAGAACAGGAAacagaaaataagaaaagcagaACCACAACTTTTCATTCTCTGTCAGAAAAATCTCCTTCCACAAATTAGTGCTACCACAAGAGGCATATGATACTCAAGCTGTGATTTCTTGTTTTTCCTCTTTTtaaactaacagctaaactaaaacattggattttttttttgtaatcatttccttctaccccccccccctcattcgTTCACCATCTCTAACATGGAAGTGAtctaacctttttttttttttttcattttaattTAAGAAAATAGTAGAAAGTTAGCAACGGCCTCGAACTATCACCAGGAGGAGGAGAAACCTGTCTGATCCAGGGTCCTGTGTAAAGGGTAGGCTGTGTCGGCAGCCATGCGCTGAGGTGAGGCTGCTAGGATGACATGTggatgtgtggggagatggggaggagagagagagagaagggagagagagagagaagggagagagagacagagagggaggagagagagggggaaggtacagagagaaggaaggagaagacATACATTTGGTTGTGggggtgaggaagggagggagagagagagagagggggaagacataCATTTGGTTGTGGGggtaaggaagagagagggggggaagggagagagagggggctacaCACTGGTCAAGTAATCAGTCCATTGGTCTCCTTTCTCCATGTTTCTTTGTAAACTCTTCCGCGTTCTTAAAGAATTTTTTCCGGTCCTTTGAGTATTCTTCTGCTAAGTCTGCCCTCAGAGGGTGCTCTGGCTGGGGGTCGTTCACCAACGCAATCAGGGACTGAATTACTTGGTCCGTTTTGGTGGCTGGCTTCCAGTTCTCTGCGCTGATGACAGGCAGACACACCTGTCCCTTCTCGTCGATGTTGGGGTGGTAGATCTTCGTCTTGAACGTGATCTTGGGGGGCTTGAAGGGGTACTCGGCGGGGAAGATTAATTCAATCCTGAAAGCTCCCTTGTCATAAGGTGCGTTGTCAGGGACAATGAGACCTTGCCAGGTCAGTATGTTGGATTCATCCACTTGAATGTTTCGGAAGTTTTTCATTCCAGACTTGCGAATCTCTTCAAGTTCCTTGTGCAGTCTCCTGCTCGCCG
>TU1161560
ACCAAATGGTTAGCCATCTTTATTATGAAACATTGGACTGAATCACACAGCTGTTACACCctactggcagacagacagctcagtgtAAGGTACCTGTTACATAGGACCACTGTCACTGTGAGGTAAATCAGTCTGTGTcaaaaaatggcaccctatttcctgtatagcacactactttagaccagagccctattccctatatagcgcactactatagaccagagccctatatagtgcactacaatagaccagcgccctattccctatatagcacactactatagaccagagccctattccctatatagcgcactgcGTATGAACACAGCACATAAGTGCCCTACAATTTGGCCAGAAccctaaagggaatagggtgccattttggactcaaCTTCAGTCCCCTGGTGTTGCCCCAATCAGGTCTGACCCTTCACTAAGACCTGGGGGGGCTGTTCTGTTCCAGTGGCTATATCAGCCACTGAGATATACATATATACGTGTGAGTTAGTCTCTCCGTGATGACAAATAAGATTTGGTTCACGGTGACAAGATTATATTTATGTAGAGAGGAAGGAGGTGGGGGTTCCGATTTTGAAATGTGTATGTGACGTTTGACAATACGGGTGGGAGTGATGATGATGAGCGGACTGGATAACAGACTTACAGCCATATGTGAGGAGTCAGAACTATCATTTTAACTTCCACACTTTGTCTTGAGCAGACTGCAGTGGGTGGGGTACACAGCCGACCTTACAAAACACAGAGGGAGATAACCAAAAGTATTTCAGAAGGAAGTCTCAGAATGCAAATGGAGAAAATATGTCCAATGCAAAGAGGGGCATCCTCGTAAACAGAAAATAATGGAAACTGAAGTACATTGAGTATTCTTCCGTTTTCCAATCCTAAAAAAAAAAGGCATTTTGGACCAGTGGGGAGAAAAACAGACAATTATCACCAGTCAATTACACTTGTAACCGATGACAATATTGGCTTATTGAATGGGTTGCCATTTTGTTTCTGTCTGCTCAGTGGACTGGCTTCAAACTGAGGGGGATGGACAACGGCTTGTTCCACAGAACACAGTGCAACTACAGAAGCAGAGAAGTCCGAAGGGAAAAACATTTCAGCACACACTTCCAGGGCCTAGCTAACATTTCAGCACACACTTCCAGGGCCTAGCTAACATTTCAGCACACACTTCCAGGGCCTAGCTAACGTTTCATTTTGGGGTGTGACAAAACCAAGGTGAGACAAGAGAACAGGAAacagaaaataagaaaagcagaACCACAACTTTTCATTCTCTGTCAGAAAAATCTCCTTCCACAAATTAGTGCTACCACAAGAGGCATATGATACTCAAGCTGTGATTTCTTGTTTTTCCTCTTTTtaaactaacagctaaactaaaacattggattttttttttgtaatcatttccttctaccccccccccctcattcgTTCACCATCTCTAACATGGAAGTGAtctaacctttttttttttttttcattttaattTAAGAAAATAGTAGAAAGTTAGCAACGGCCTCGAACTATCACCAGGAGGAGGAGAAACCTGTCTGATCCAGGGTCCTGTGTAAAGGGTAGGCTGTGTCGGCAGCCATGCGCTGAGGTGAGGCTGCTAGGATGACATGTggatgtgtggggagatggggaggagagagagagagaagggagagagagagagaagggagagagagacagagagggaggagagagagggggaaggtacagagagaaggaaggagaagacATACATTTGGTTGTGggggtgaggaagagagagagggggggaagggagagagagggggctacaCACTGGTCAAGTAATCAGTCCATTGGTCTCCTTTCTCCATGTTTCTTTGTAAACTCTTCCGCGTTCTTAAAGAATTTTTTCCGGTCCTTTGAGTATTCTTCTGCTAAGTCTGCCCTCAGAGGGTGCTCTGGCTGGGGGTCGTTCACCAACGCAATCAGGGACTGAATTACTGCAGAATAGACAGGGAAAACAAACGCATTAGTACAAAATCAATTGCTACATTGAGAACATGAAATGACTAGTGAAAGTGTTTCTTTT
>TU1161561
ACCAAATGGTTAGCCATCTTTATTATGAAACATTGGACTGAATCACACAGCTGTTACACCctactggcagacagacagctcagtgtAAGGTACCTGTTACATAGGACCACTGTCACTGTGAGGTAAATCAGTCTGTGTcaaaaaatggcaccctatttcctgtatagcacactactttagaccagagccctatatagggcactactatagaccagagccctattccctatatagcgcactactatagaccagagcgcactgcGTATGAACACAGCACATAAGTGCCCTACAATTTGGCCAGAAccctaaagggaatagggtgccattttggactcaaCTTCAGTCCCCTGGTGTTGCCCCAATCAGGTCTGACCCTTCACTAAGACCTGGGGGGGCTGTTCTGTTCCAGTGGCTATATCAGCCACTGAGATATACATATATACGTGTGAGTTAGTCTCTCCGTGATGACAAATAAGATTTGGTTCACGGTGACAAGATTATATTTATGTAGAGAGGAAGGAGGTGGGGGTTCCGATTTTGAAATGTGTATGTGACGTTTGACAATACGGGTGGGAGTGATGATGATGAGCGGACTGGATAACAGACTTACAGCCATATGTGAGGAGTCAGAACTATCATTTTAACTTCCACACTTTGTCTTGAGCAGACTGCAGTGGGTGGGGTACACAGCCGACCTTACAAAACACAGAGGGAGATAACCAAAAGTATTTCAGAAGGAAGTCTCAGAATGCAAATGGAGAAAATATGTCCAATGCAAAGAGGGGCATCCTCGTAAACAGAAAATAATGGAAACTGAAGTACATTGAGTATTCTTCCGTTTTCCAATCCTAAAAAAAAAAGGCATTTTGGACCAGTGGGGAGAAAAACAGACAATTATCACCAGTCAATTACACTTGTAACCGATGACAATATTGGCTTATTGAATGGGTTGCCATTTTGTTTCTGTCTGCTCAGTGGACTGGCTTCAAACTGAGGGGGATGGACAACGGCTTGTTCCACAGAACACAGTGCAACTACAGAAGCAGAGAAGTCCGAAGGGAAAAACATTTCAGCACACACTTCCAGGGCCTAGCTAACATTTCAGCACACACTTCCAGGGCCTAGCTAACATTTCAGCACACACTTCCAGGGCCTAGCTAACGTTTCATTTTGGGGTGTGACAAAACCAAGGTGAGACAAGAGAACAGGAAacagaaaataagaaaagcagaACCACAACTTTTCATTCTCTGTCAGAAAAATCTCCTTCCACAAATTAGTGCTACCACAAGAGGCATATGATACTCAAGCTGTGATTTCTTGTTTTTCCTCTTTTtaaactaacagctaaactaaaacattggattttttttttgtaatcatttccttctaccccccccccctcattcgTTCACCATCTCTAACATGGAAGTGAtctaacctttttttttttttttcattttaattTAAGAAAATAGTAGAAAGTTAGCAACGGCCTCGAACTATCACCAGGAGGAGGAGAAACCTGTCTGATCCAGGGTCCTGTGTAAAGGGTAGGCTGTGTCGGCAGCCATGCGCTGAGGTGAGGCTGCTAGGATGACATGTATGTGTGAGggaagaatggaggagaggatgtgtggggagatggggaggagagagagagagaagggagagagagagagaagggagagagagacagagagggaggagagagagggggaaggtacagagagaaggaaggagaagacATACATTTGGTTGTGggggtgaggaagagagagagggggggaagggagagagagggggctacaCACTGGTCAAGTAATCAGTCCATTGGTCTCCTTTCTCCATGTTTCTTTGTAAACTCTTCCGCGTTCTTAAAGAATTTTTTCCGGTCCTTTGAGTATTCTTCTGCTAAGTCTGCCCTCAGAGGGTGCTCTGGCTGGGGGTCGTTCACCAACGCAATCAGGGACTGAATTACTGCAGAATAGACAGGGAAAACAAACGCATTAGTACAAAATCAATTGCTACATTGAGAACATGAAATGACTAGTGAAAGTGTTTCTTTT

Function

symbol description
ube2l3 Enables several functions, including ubiquitin conjugating enzyme activity; ubiquitin protein ligase binding activity; and ubiquitin-protein transferase activator activity. Involved in several processes, including cellular response to glucocorticoid stimulus; positive regulation of ubiquitin-protein transferase activity; and protein K11-linked ubiquitination. Located in cytoplasm and nucleus.

NR:

description
ubiquitin-conjugating enzyme E2 L3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1161562 False 2399 lncRNA 0.46 5 78573831 78578346
TU1161560 False 2098 lncRNA 0.44 4 78576140 78578346
TU1161561 True 2069 lncRNA 0.44 3 78576140 78578346

Neighbor

gene id symbol gene type direction distance location
LOC110536450 LOC106570886 coding downstream 86629 78485116 ~ 78487202 (-)
LOC110536449 LOC106570861 coding downstream 97511 78468533 ~ 78476320 (-)
LOC110536447 LOC106570860 coding downstream 140345 78414793 ~ 78433486 (-)
LOC118936501 LOC106570849 coding downstream 752277 77778061 ~ 77821554 (-)
LOC110535124 LOC106570849 coding downstream 795809 77759929 ~ 77778022 (-)
cnot6l cnot6l coding upstream 196219 78774565 ~ 78797212 (-)
LOC110536655 LOC106570895 coding upstream 616527 79194873 ~ 79224499 (-)
LOC110535130 LOC106570891 coding upstream 680965 79259311 ~ 79265496 (-)
LOC110535133 LOC106570898 coding upstream 1302672 79881016 ~ 79984913 (-)
LOC110535132 LOC106570901 coding upstream 1427037 80005383 ~ 80007650 (-)
G1021104 NA non-coding downstream 1245 78572198 ~ 78572586 (-)
G1021095 NA non-coding downstream 21265 78547599 ~ 78552566 (-)
G1021075 NA non-coding downstream 55572 78518040 ~ 78518259 (-)
G1020813 NA non-coding downstream 63301 78510150 ~ 78510530 (-)
G1020796 NA non-coding downstream 93200 78480105 ~ 78480631 (-)
G1021107 NA non-coding upstream 510 78578856 ~ 78579996 (-)
G1021109 NA non-coding upstream 4550 78582896 ~ 78583145 (-)
G1021111 NA non-coding upstream 9860 78588206 ~ 78588439 (-)
G1021065 NA non-coding upstream 12692 78591038 ~ 78592656 (-)
G1021113 NA non-coding upstream 20236 78598582 ~ 78598820 (-)
G1021084 NA other downstream 6984 78553628 ~ 78566847 (-)
ccdc125 ccdc125 other downstream 946265 77619098 ~ 77644804 (-)
G1019926 NA other downstream 997167 77575871 ~ 77576664 (-)
G1019413 NA other downstream 1617014 76955366 ~ 76956817 (-)
G1021129 NA other upstream 55275 78633621 ~ 78634401 (-)
G1021664 NA other upstream 844164 79422510 ~ 79423479 (-)
G1021853 NA other upstream 1126873 79705219 ~ 79705722 (-)
G1022395 LOC106570911 other upstream 1577151 80148560 ~ 80159395 (-)

Expression


Co-expression Network