G1021368


Basic Information

Item Value
gene id G1021368
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 79127333 ~ 79169673 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1161929
CGTGTGTTCAACAGTTTTATTACTAAAAAGGCACCGAATACAGGCATCATATCCATAGCATTGGAATTAGTTCCATAAATGATAGCACCAAAAAAACTCCACCTTCCCACTGTTTTATTGATAGGCACACAGTTCTATGAAATATGAAATTAAAtgaaagagtgagggagagagagagagagagagaaagagagagagagagagagagagaaagagagagagaaagagagagagagagagaaagagagagagagaaatcaatgcCACACAAAACTGTTTTCTGCAGAACATTCAGTGCTGTGGGATGATCAATCAGccgtaatcaatcaatcaatgattGGTTGTGTTATAAcacttacatacacacaccacaaatGTTACACATAATTTTAACAGATGATTGGCCAAACATACAGTAATAAATGATATGGGTAATAAATGATATGGGTAATAACATGATATGGGTATTAATTAACATGATATGGGTAATAAATGATATGGGTAATAACATGATAATAATGCATACTGCAATATCAACAGTTAAATAATTATGTGAATGAACATAGGTaatgtcccaaatggcgccctattgtCTATATGGTGCCCTATTGTCTATATGGTGCCCTATTGTCAAGTAGTGCCCTATTGTCATGTAGTGCCCTATTgtcaagtagtgcactacaaagggaataggatgccatttgagatgTAACCATGGTGTTGTGGGATTGAACGTGTATGTACATCACAAATATATAACTGAGGCATTTGGGGTGTTTTGGCACACAGAAGGCAAGGCATAAAATAAAACAGACACTTGTATAAAATATGACAATTTAACTGTAACATATTCAAATGATGAATTACAagaaatcagttctgttatagtcataATCACAAGGCTACAGCAGCATCCAacgggagtgagtgagtgagtaggcAGGTGGGCACCAACGTAGCTAGGCTATCTACTCTACAGTGGTCGTATTCTATTGTGGAATATCTATTCACTCGGTATCTATGTCAGATCATTATTACAATCATTCACTGATGGAATTCCACTTTTTACCCTTTTGGTGAAAATACTTTGGACTATTTGTCTGGATTTGTAAAAGCATGAGACAGTACTGCATGGAATGGCACTTGTAGAAAGGTGTTGAGCTTTTTGTCTAGATAAAATAACATagtggctgcatttacacaggcggCCCAATTATGATCATttttcacaatttttttttttttttttgaccagctctgaaaaaaaaatgtgatgtgattggtcaaaagatcagaatattctgcctgtgtaaacgcaaccAGTGTGCATCCAAAAAAAGACACCCCTATTCCCTAGTGGACTACTTTTGTCTAGGACATATTGGTGCACCATAAAGTAcagatcagtgtttcccaactccagacGTGCAGTACTCCCAACAGCtcaattagttgaatcaggtgagtttgtcTGGGGCTACAACAATAATGTGggcttttgggggtactggaggactggagttgggcttttgggggtactggaggaccagagttgggctgttgggggtactggaggactagaGTTGGtcttttgggggtactggaggactggagttgggctgttgggggtactggaggactggagttgggctgttggggggactggaggaccgtagttgggctgttggggggactggaggacgGGAGTTGGGCTGTCGGGGGGTaagggaggactggagttgggctgttggggGAAATGGTGA
>TU1161928
CGTGTGTTCAACAGTTTTATTACTAAAAAGGCACCGAATACAGGCATCATATCCATAGCATTGGAATTAGTTCCATAAATGATAGCACCAAAAAAACTCCACCTTCCCACTGTTTTATTGATAGGCACACAGTTCTATGAAATATGAAATTAAAtgaaagagtgagggagagagaaagagagagagagagagaaagagagagagagagagagagagagagagagagagagagggagggagagacggagagagagagagagagagagagagagagagagagagagagagagagaaatcaatgcCACACAAAACTGTTTTCTGCAGAACATTCAGTGCTGTGGGATGATCAATCAGccgtaatcaatcaatcaatgattGGTTGTGTTATAAcacttacatacacacaccacaaatGTTACACATAATTTTAACAGATGATTGGCCAAACATACAGTAATAAATGATATGGGTAATAAATGATATGGGTAATAACATGATATGGGTATTAATTAACATGATATGGGTAATAAATGATATGGGTAATAACATGATAATAATGCATACTGCAATATCAACAGTTAAATAATTATGTGAATGAACATAGGTaatgtcccaaatggcgccctattgtCTATATGGTGCCCTATTGTCATGTAGTGCCCTATTGTCTATATGGTGCCCTATTGTCTATATGGTGCCCTATTGTCTATATGGTGCCCTATTGTCTATATGGTGCCCTATTGTCTATATGGTGCCCTATTGTCAAGTAGTGCCCTATTGTCATGTAGTGCCCTATTgtcaagtagtgcactacaaagggaataggatgccatttgagatgTAACCATGGTGTTGTGGGATTGAACGTGTATGTACATCACAAATATATAACTGAGGCATTTGGGGTGTTTTGGCACACAGAAGGCAAGGCATAAAATAAAACAGACACTTGTATAAAATATGACAATTTAACTGTAACATATTCAAATGATGAATTACAagaaatcagttctgttatagtcataATCACAAGGCTACAGCAGCATCCAacgggagtgagtgagtgagtaggcAGGTGGGCACCAACGTAGCTAGGCTATCTACTCTACAGTGGTCGTATTCTATTGTGGAATATCTATTCACTCGGTATCTATGTCAGATCATTATTACAATCATTCACTGATGGAATTCCACTTTTTACCCTTTTGGTGAAAATACTTTGGACTATTTGTCTGGATTTGTAAAAGCATGAGACAGTACTGCATGGAATGGCACTTGTAGAAAGGTGTTGAGCTTTTTGTCTAGATAAAATAACATagtggctgcatttacacaggcggCCCAATTATGATCATttttcacaatttttttttttttttttgaccagctctgaaaaaaaaatgtgatgtgattggtcaaaagatcagaatattctgcctgtgtaaacgcaaccAGTGTGCATCCAAAAAAAGACACCCCTATTCCCTAGTGGACTACTTTTGTCTAGGACATATTGGTGCACCATAAAGTAcagatcagtgtttcccaactccagacGTGCAGTACTCCCAACAGCtcaattagttgaatcaggtgagtttgtcTGGGGCTACAACAATAATGTGggcttttgggggtactggaggactggagttgggcttttgggggtactggaggaccagagttgggctgttgggggtactggaggactagaGTTGGtcttttgggggtactggaggactggagttgggctgttgggggtactggaggactggagttgggctgttggggggactggaggaccgtagttgggctgttggggggactggaggacgGGAGTTGGGCTGTCGGGGGGTaagggaggactggagttgggctgttgggggtactggaggactggagttgggctgttggggggactgg
>TU1161931
CGTGTGTTCAACAGTTTTATTACTAAAAAGGCACCGAATACAGGCATCATATCCATAGCATTGGAATTAGTTCCATAAATGATAGCACCAAAAAAACTCCACCTTCCCACTGTTTTATTGATAGGCACACAGTTCTATGAAATATGAAATTAAAtgaaagagtgagggagagagagagagagagagagagagagagagagggagggagagacggagagagagagagagagagagagagagagagagagagagagagaaagagagagagagagaaagagagagagagagagagagagaaagagagagagaaagagagagagagagagaaagagagagagagaaatcaatgcCACACAAAACTGTTTTCTGCAGAACATTCAGTGCTGTGGGATGATCAATCAGccgtaatcaatcaatcaatgattGGTTGTGTTATAAcacttacatacacacaccacaaatGTTACACATAATTTTAACAGATGATTGGCCAAACATACAGTAATAAATGATATGGGTAATAAATGATATGGGTAATAACATGATATGGGTATTAATTAACATGATATGGGTAATAAATGATATGGGTAATAACATGATAATAATGCATACTGCAATATCAACAGTTAAATAATTATGTGAATGAACATAGGTaatgtcccaaatggcgccctattgtCTATATGGTGCCCTATTGTCTATATGGTGCCCTATTGTCAAGTAGTGCCCTATTGTCATGTAGTGCCCTATTgtcaagtagtgcactacaaagggaataggatgccatttgagatgTAACCATGGTGTTGTGGGATTGAACGTGTATGTACATCACAAATATATAACTGAGGCATTTGGGGTGTTTTGGCACACAGAAGGCAAGGCATAAAATAAAACAGACACTTGTATAAAATATGACAATTTAACTGTAACATATTCAAATGATGAATTACAagaaatcagttctgttatagtcataATCACAAGGCTACAGCAGCATCCAacgggagtgagtgagtgagtaggcAGGTGGGCACCAACGTAGCTAGGCTATCTACTCTACAGTGGTCGTATTCTATTGTGGAATATCTATTCACTCGGTATCTATGTCAGATCATTATTACAATCATTCACTGATGGAATTCCACTTTTTACCCTTTTGGTGAAAATACTTTGGACTATTTGTCTGGATTTGTAAAAGCATGAGACAGTACTGCATGGAATGGCACTTGTAGAAAGGTGTTGAGCTTTTTGTCTAGATAAAATAACATagtggctgcatttacacaggcggCCCAATTATGATCATttttcacaatttttttttttttttttgaccagctctgaaaaaaaaatgtgatgtgattggtcaaaagatcagaatattctgcctgtgtaaacgcaaccAGTGTGCATCCAAAAAAAGACACCCCTATTCCCTAGTGGACTACTTTTGTCTAGGACATATTGGTGCACCATAAAGTAcagatcagtgtttcccaactccagacGTGCAGTACTCCCAACAGCtcaattagttgaatcaggtgagtttgtcTGGGGCTACAACAATAATGTGggcttttgggggtactggaggactggagttgggcttttgggggtactggaggaccagagttgggctgttgggggtactggaggactagaGTTGGtcttttgggggtactggaggactggagttgggctgttgggggtactggaggactggagttgggctgttggggggactggaggaccgtagttgggctgttggggggactggaggacgGGAGTTGGGCTGTCGGGGGGTaagggaggactggagttgggctgttgggggtactggaggactggagttgggctgttggggggactgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1161929 False 1763 lncRNA 0.41 4 79127333 79169673
TU1161928 False 1923 lncRNA 0.42 2 79167671 79169673
TU1161931 True 1877 lncRNA 0.42 3 79167671 79169673

Neighbor

gene id symbol gene type direction distance location
cnot6l cnot6l coding downstream 330121 78774565 ~ 78797212 (-)
LOC110536450 LOC106570886 coding downstream 640131 78485116 ~ 78487202 (-)
LOC110536449 LOC106570861 coding downstream 651013 78468533 ~ 78476320 (-)
LOC110536447 LOC106570860 coding downstream 693847 78414793 ~ 78433486 (-)
LOC118936501 LOC106570849 coding downstream 1305779 77778061 ~ 77821554 (-)
LOC110536655 LOC106570895 coding upstream 25200 79194873 ~ 79224499 (-)
LOC110535130 LOC106570891 coding upstream 89638 79259311 ~ 79265496 (-)
LOC110535133 LOC106570898 coding upstream 711345 79881016 ~ 79984913 (-)
LOC110535132 LOC106570901 coding upstream 835710 80005383 ~ 80007650 (-)
areg hbegf coding upstream 876024 80045697 ~ 80063028 (-)
G1021318 NA non-coding downstream 77782 79047876 ~ 79049551 (-)
G1021317 NA non-coding downstream 80579 79045947 ~ 79046754 (-)
G1021299 NA non-coding downstream 124272 79002258 ~ 79003061 (-)
G1021290 NA non-coding downstream 147400 78979614 ~ 78979933 (-)
G1021235 NA non-coding downstream 266709 78860054 ~ 78860624 (-)
G1021393 NA non-coding upstream 4324 79173997 ~ 79174325 (-)
G1021395 LOC106570892 non-coding upstream 5382 79175055 ~ 79176292 (-)
G1021403 NA non-coding upstream 15533 79185206 ~ 79185537 (-)
G1021406 NA non-coding upstream 16618 79186291 ~ 79187831 (-)
G1021407 NA non-coding upstream 21326 79190999 ~ 79191360 (-)
G1021129 NA other downstream 492932 78633621 ~ 78634401 (-)
G1021084 NA other downstream 560486 78553628 ~ 78566847 (-)
ccdc125 ccdc125 other downstream 1499767 77619098 ~ 77644804 (-)
G1019926 NA other downstream 1550669 77575871 ~ 77576664 (-)
G1021664 NA other upstream 252837 79422510 ~ 79423479 (-)
G1021853 NA other upstream 535546 79705219 ~ 79705722 (-)
G1022395 LOC106570911 other upstream 985824 80148560 ~ 80159395 (-)
G1022578 NA other upstream 1301766 80471439 ~ 80473767 (-)

Expression


Co-expression Network