G1021381 (fras1)


Basic Information

Item Value
gene id G1021381
gene name fras1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 79151294 ~ 79152104 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1161949
GCTGTAAGAGGAGGTGGCTTTCCAGAGCTGGTAGGGAGAATCAAAGGACTGGGCGCTCCAGATGAGCTGCATGTCGAACTCTATCCCCCCCAGGTGGTCCGGGACCATCAGGTGGGACTTGTGCCCAGGCAGAGTGTGGTGCTCGGGGACAAACTGGCCCCTGAACTTGGCGTGTGTTTTGAACTCGATGACCAGACGGCCATCTTCTCTTATGTAGATCCTGATGATCTGGAGTCTGGCTGAcagaacgctgtctgtctg

Function

symbol description
fras1 Acts upstream of or within several processes, including basement membrane organization; embryonic viscerocranium morphogenesis; and epithelial structure maintenance. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including median fin fold; mesoderm; nervous system; pharyngeal arch; and trunk. Human ortholog(s) of this gene implicated in Fraser syndrome 1. Orthologous to human FRAS1 (Fraser extracellular matrix complex subunit 1).

NR:

description
PREDICTED: extracellular matrix protein FRAS1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1161949 True 261 lncRNA 0.56 2 79151294 79152104

Neighbor

gene id symbol gene type direction distance location
cnot6l cnot6l coding downstream 354082 78774565 ~ 78797212 (-)
LOC110536450 LOC106570886 coding downstream 664092 78485116 ~ 78487202 (-)
LOC110536449 LOC106570861 coding downstream 674974 78468533 ~ 78476320 (-)
LOC110536447 LOC106570860 coding downstream 717808 78414793 ~ 78433486 (-)
LOC118936501 LOC106570849 coding downstream 1329740 77778061 ~ 77821554 (-)
LOC110536655 LOC106570895 coding upstream 42769 79194873 ~ 79224499 (-)
LOC110535130 LOC106570891 coding upstream 107207 79259311 ~ 79265496 (-)
LOC110535133 LOC106570898 coding upstream 728914 79881016 ~ 79984913 (-)
LOC110535132 LOC106570901 coding upstream 853279 80005383 ~ 80007650 (-)
areg hbegf coding upstream 893593 80045697 ~ 80063028 (-)
G1021378 NA non-coding downstream 3949 79146819 ~ 79147345 (-)
G1021377 NA non-coding downstream 9388 79141418 ~ 79141906 (-)
G1021318 NA non-coding downstream 101743 79047876 ~ 79049551 (-)
G1021317 NA non-coding downstream 104540 79045947 ~ 79046754 (-)
G1021299 NA non-coding downstream 148233 79002258 ~ 79003061 (-)
G1021393 NA non-coding upstream 21893 79173997 ~ 79174325 (-)
G1021395 LOC106570892 non-coding upstream 22951 79175055 ~ 79176292 (-)
G1021403 NA non-coding upstream 33102 79185206 ~ 79185537 (-)
G1021406 NA non-coding upstream 34187 79186291 ~ 79187831 (-)
G1021407 NA non-coding upstream 38895 79190999 ~ 79191360 (-)
G1021129 NA other downstream 516893 78633621 ~ 78634401 (-)
G1021084 NA other downstream 584447 78553628 ~ 78566847 (-)
ccdc125 ccdc125 other downstream 1523728 77619098 ~ 77644804 (-)
G1019926 NA other downstream 1574630 77575871 ~ 77576664 (-)
G1021664 NA other upstream 270406 79422510 ~ 79423479 (-)
G1021853 NA other upstream 553115 79705219 ~ 79705722 (-)
G1022395 LOC106570911 other upstream 1003393 80148560 ~ 80159395 (-)
G1022578 NA other upstream 1319335 80471439 ~ 80473767 (-)

Expression


Co-expression Network