G1021733


Basic Information

Item Value
gene id G1021733
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 79559378 ~ 79584108 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1162430
tagagttctacagggtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagagttctacagggtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggcaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggtaattccactttgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttatacagggtaattccactgtgagactcttagatagagttctacagggtaactacactgtgagactcttagatagagttctacagggtaattacactgcgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttataTAGAGtgctacagggtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagagttctacagggtaattccactgtgagactcttagatagagttctaaagggtaattccactgtgagactc
>TU1162422
GTTAATGTATGTTTGGAGTGTCCACAATGTTCCATCCGCTCCTACCTGAAGACTGTTAATGTATGTTATATTCCATCCCAGTTTCCATCTCCTTAGGGGGCTCCAAATGTGGAAAGTACCAGATAAAATGAACTGCTATTGGTGGATATGCCTGGACTGAAGGCAAGGAAGCAATAGTTGAAGACTAGCTACCTGTCCAGGTGGTTTGTtatacagggtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggtaattccactttgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggaaattccactgtgagactcttagagttctacagggtaattccactgtgagactctaagatagagttctacagggtaattccactgtgagacaccgagatagagttctacagggtaattccactttgagactcttagatatagttctacagggtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagagttCTACAgagtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggtaattccactttgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttatacagggtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttatacagggtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggtaattacactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagacaccgagatagagttctacag
>TU1162429
GTTAATGTATGTTTGGAGTGTCCACAATGTTCCATCCGCTCCTACCTGAAGACTGTTAATGTATGTTATATTCCATCCCAGTTTCCATCTCCTTAGGGGGCTCCAAATGTGGAAAGTACCAGATAAAATGAACTGCTATTGGTGGATATGCCTGGACTGAAGGCAAGGAAGCAATAGTTGAAGACTAGCTACCTGTCCAGGTGGTTTGTtatacagggtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggtaattccactttgagactcttagatagagttctacagggtaactacactgtgagactcttagatagagttctacagggtaactacactgtgagactgttagatagagttctacagggtaactacactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggtaactacactgtgagactcttagatagagttatacagggtaattacactgtgagactcttagatagagttctacagggtaattccactgtgagactcttaaaTAGAGTTTTACAGGGTAATTACACTgcgagactcttagatagagttctacagggtaattccactgtgagacaccTAGATAGAGtgctacagggtaattccactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagagttctacagggtaattccactgtgagactcttagatagagttctaaagggtaattccactgtgagactcttagatagagttctacagggtaactacactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggtaactacactgtgagactgttagatagagttctacagggtaactacactgtgagactcttagatagagttctacagggtaattccactgtgagactcttagatagagttctacagggtaactacactgtgagactcttagatagagttatacagggtaattacactgtgagactcttagatagagttctacagggtaattccactgtgagactcttaaaTAGAGTTTTACAGGGTAATTACACTgcgagactcttagatagagttctacagggtaattccactgtgagacaccTAGATAGAGtgctacagggtaattccact

Function

NR:

description
periostin isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1162430 False 650 lncRNA 0.41 2 79559378 79578571
TU1162422 False 1144 lncRNA 0.41 3 79572246 79584108
TU1162429 True 1277 lncRNA 0.41 4 79579978 79584108

Neighbor

gene id symbol gene type direction distance location
LOC110535130 LOC106570891 coding downstream 293882 79259311 ~ 79265496 (-)
LOC110536655 LOC106570895 coding downstream 334879 79194873 ~ 79224499 (-)
cnot6l cnot6l coding downstream 762166 78774565 ~ 78797212 (-)
LOC110536450 LOC106570886 coding downstream 1072176 78485116 ~ 78487202 (-)
LOC110536449 LOC106570861 coding downstream 1083058 78468533 ~ 78476320 (-)
LOC110535133 LOC106570898 coding upstream 296910 79881016 ~ 79984913 (-)
LOC110535132 LOC106570901 coding upstream 421275 80005383 ~ 80007650 (-)
areg hbegf coding upstream 461589 80045697 ~ 80063028 (-)
LOC118937416 epgn coding upstream 499875 80083983 ~ 80090278 (-)
mthfd2l LOC106570897 coding upstream 516969 80101077 ~ 80127827 (-)
G1021723 NA non-coding downstream 17634 79540470 ~ 79541744 (-)
G1021647 LOC106570902 non-coding downstream 143786 79387657 ~ 79415592 (-)
G1021650 NA non-coding downstream 167039 79391541 ~ 79392339 (-)
G1021648 NA non-coding downstream 170763 79388009 ~ 79388615 (-)
G1021631 NA non-coding downstream 207902 79350788 ~ 79351476 (-)
G1021742 NA non-coding upstream 3101 79587209 ~ 79587672 (-)
G1021748 NA non-coding upstream 10693 79594801 ~ 79595066 (-)
G1021749 NA non-coding upstream 11043 79595151 ~ 79595368 (-)
G1021751 NA non-coding upstream 12691 79596799 ~ 79597145 (-)
G1021760 NA non-coding upstream 27693 79611801 ~ 79612074 (-)
G1021664 NA other downstream 135899 79422510 ~ 79423479 (-)
G1021129 NA other downstream 924977 78633621 ~ 78634401 (-)
G1021084 NA other downstream 992531 78553628 ~ 78566847 (-)
ccdc125 ccdc125 other downstream 1931812 77619098 ~ 77644804 (-)
G1021853 NA other upstream 121111 79705219 ~ 79705722 (-)
G1022395 LOC106570911 other upstream 571389 80148560 ~ 80159395 (-)
G1022578 NA other upstream 887331 80471439 ~ 80473767 (-)
G1022584 NA other upstream 904446 80488554 ~ 80489044 (-)

Expression


Co-expression Network