XLOC_002904 (ccdc169)


Basic Information

Item Value
gene id XLOC_002904
gene name ccdc169
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34872195 ~ 34889053 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005366
CTCGACACCGACGAAAGTGAAACCCGTCCGTTTGTTCAGACTAAAATGGGAGAAAGCGATCTCGGAAATTATGAAAGTTCTCGACTGCATGCAGAAGTGGAGCACGAGAGAGAGGTCAAGGAGATGTTGCAGGACTCTGTGTCTGATCTGAGGAACACCTTGGCTGATTTGGAGAGACGACTTCACAGTGTAGAGGAAGAAGAGAACGAGTGGAGGACCCGATACGAGACTCAGCTGGAGCTGAATGAACAGCTGGAGAAACAAATCAGTGTAGTTCGAGAGAGACTCCAGACTCTCCGCAGTGATCCTTCAGATCGACTGGCTTCTATCCGCTCATATGAAGAAATGTCTGAGGATGCTCTCAGACAAAGGCTGAAATTACTGTCTTCTGAGAAGAGCGGCCTTCAAGCCCAACTGATGGATTTCCGAATGAGGATTGTGCAGGAAGGAAAGgCTTACCAGAAAGTCTATGAAGAGAGGAGGGCGTATCTAGCAGAGATTGCAAAGCTGTCTTCAACACTGAATCTCAGCAGAAAGCAGCAGATGGCCGAAGCCAGAAGGACAGCAGCGGCTCCTGACAAAACAGCTGGGAAAAGTACGAAGCAACATTCAGGTGCGGCGAAGAAAGGGTCTGTCAACAACACCCCAGCAAGAAGCAGACTCCCTCGATTAAAACATTAATACACGAGAACTGATTATTTCtgcaaaaatgtcatttattttacactttttgaTAACAGACCAGAATTCAATGACATtcactaaataaaaa
>TCONS_00005367
GTTCAGACTAAAATGGGAGAAAGCGATCTCGGAAATTATGAAAGTTCTCGACTGCATGCAGAAGTGGAGCACGAGAGAGAGGTCAAGGAGATGTTGCAGGACTCTGTGTCTGATCTGAGGAACACCTTGGCTGATTTGGAGAGACGACTTCACAGTGTAGAGGAAGAAGGTCTGTAGGCTTCTACATGAAGAATCAATATTGACGTTATATTCCAGAAGAATCGTTTTATACTCCAGAGATTTTCAGCATATGGCAAGCGTGGAGGACCCGATACGAGACTCAGCTGGAGCTGAATGAACAGCTGGAGAAACAAATCAGTGTAGTTCGAGAGAGACTCCAGACTCTCCGCAGTGATCCTTCAGgaagaaggtcgcaggtttgagtcttggctgggtcagtcggcattttagtgtggagtttgcatgttctacgcCATTGGCGTAggtatcctccgggtgctccagtttccccccacagtccaaagacatgtgctatagATCGACTGGCTTCTATCCGCTCATATGAAGAAATGTCTGAGGATGCTCTCAGACAAAGGCTGAAATTACTGTCTTCTGAGAAGAGCGGCCTTCAAGCCCAACTGATGGATTTCCGAATGAGGATTGTGCAGGAAGGAAAGgCTTACCAGAAAGTCTATGAAGAGAGGAGGGCGTATCTAGCAGAGATTGCAA

Function

symbol description
ccdc169 Orthologous to human CCDC169 (coiled-coil domain containing 169).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-29 Orthologous to human CCDC169 (coiled-coil domain containing 169).

Ensembl:

ensembl_id ENSDARG00000089570

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005366 False 772 mRNA 0.46 8 34872195 34889053
TCONS_00005367 True 690 lncRNA 0.47 7 34880648 34889020

Neighbor

gene id symbol gene type direction distance location
XLOC_002903 dclk1a coding downstream 458 34737322 ~ 34871737 (-)
XLOC_002902 BX510654.1 coding downstream 544801 34327262 ~ 34327394 (-)
XLOC_002901 pimr167 coding downstream 628926 34220492 ~ 34243269 (-)
XLOC_002898 pimr145 coding downstream 648628 34171674 ~ 34223567 (-)
XLOC_002905 sparta coding upstream 275 34889328 ~ 34916208 (-)
XLOC_002906 CT573139.2 coding upstream 62007 34951060 ~ 34959178 (-)
XLOC_002907 smad9 coding upstream 71698 34960751 ~ 35002731 (-)
XLOC_002908 supt20 coding upstream 123041 35012094 ~ 35052198 (-)
XLOC_002909 NA coding upstream 165228 35054281 ~ 35058444 (-)
XLOC_002900 NA non-coding downstream 673629 34196782 ~ 34198566 (-)
XLOC_002891 BX569785.1 non-coding downstream 991831 33876131 ~ 33880364 (-)
XLOC_002890 NA non-coding downstream 1207406 33663165 ~ 33664789 (-)
XLOC_002885 dre-mir-130a non-coding downstream 1494981 33377130 ~ 33377214 (-)
XLOC_002912 BX465844.1 non-coding upstream 270957 35160010 ~ 35164291 (-)
XLOC_002917 NA non-coding upstream 423839 35312892 ~ 35321637 (-)
XLOC_002919 NA non-coding upstream 540451 35429504 ~ 35431655 (-)

Expression


Co-expression Network