G1022413


Basic Information

Item Value
gene id G1022413
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 80097045 ~ 80097681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1163305
tattattttgtaaCAAAGGCACGTTCTCCGTGGTTGAATAGTGGTCGCTGTGCACAGTTCGGAAACACATCAGTGTGCTGCTGAATTTGCGCCTTTTCCtttttcctagaccatgttgctatgtgcataatagcaacaTTAACCAGCATATTGTTGTTGAGAGCAATGGCCCAGAATGAGGAGATGAGAAAACAGCCCTTTCCTTattgtctaagaaaagtgaggagagaggaaacccaGAACTTAAATTAAATCTATAATCAATAACCTAACtattaaatgtgcctggcttaaTAAATCATCAATATATCTccagaaataagacagatcctgcttctgttgcctgtttgagtgtttgtttattagcctactgattccgtgagcaccaagcctcacgCAACCACATGTCAagtaaataatttaaaaaatatttgtttatttaaaatttttttttaaatgtaatcttaGCTGTATTAAAGGCTTTACACAATTTTGTATTCGTTAGTACAGCCTCTGATATTATTTATAATTTATTtagtgtttacactgttccaaa
>TU1163306
tattattttgtaaCAAAGGCACGTTCTCCGTGGTTGAATAGTGGTCGCTGTGCACAGTTCGGAAACACATCAGTGTGCTGCTGAATTTGCGCCTTTTCCtttttcctagaccatgttgctatgtgcataatagcaacaTTAACCAGCATATTGTTGTTGAGAGCAATGGCCCAGAATGAGGAGATGAGAAAACAGCCCTTTCCTTattgtctaagaaaagtgaggagagaggaaacccaGAACTTAAATTAAATCTATAATCAATAACCTAACtattaaatgtgcctggcttaaTAAATCATCAATATATCTccagaaataagacagatcctgcttctgttgcctgtttgagtgtttgtttattagcctactgattccgtgagcaccaagcctcacgCAACCACATGTCAagtaaat
>TU1163307
aaattatattagtTAATTAAAAGTATGTtatatataaattatataaattatattagtatattatatatattatataaattatattattttgtaaCAAAGGCACGTTCTCCGTGGTTGAATAGTGGTCGCTGTGCACAGTTCGGAAACACATCAGTGTGCTGCTGAATTTGCGCCTTTTCCtttttcctagaccatgttgctatgtgcataatagcaacaTTAACCAGCATATTGTTGTTGAGAGCAATGGCCCAGAATGAGGAGATGAGAAAACAGCCCTTTCCTTattgtctaagaaaagtgaggagagaggaaacccaGAACTTAAATTAAATCTATAATCAATAACCTAACtattaaatgtgcctggcttaaTAAATCATCAATATATCTccagaaataagacagatcctgcttctgttgcctgtttgagtgtttgtttattagcctactgattccgtgagcaccaagcctcacgCAACCACATGTCAagtaaat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1163305 False 556 lncRNA 0.35 1 80097045 80097600
TU1163306 False 417 lncRNA 0.40 1 80097184 80097600
TU1163307 True 498 lncRNA 0.34 1 80097184 80097681

Neighbor

gene id symbol gene type direction distance location
LOC118937416 epgn coding downstream 6767 80083983 ~ 80090278 (-)
areg hbegf coding downstream 34017 80045697 ~ 80063028 (-)
LOC110535132 LOC106570901 coding downstream 89395 80005383 ~ 80007650 (-)
LOC110535133 LOC106570898 coding downstream 112132 79881016 ~ 79984913 (-)
LOC110535130 LOC106570891 coding downstream 831549 79259311 ~ 79265496 (-)
mthfd2l LOC106570897 coding upstream 3396 80101077 ~ 80127827 (-)
LOC110536467 LOC106570909 coding upstream 207881 80305562 ~ 80320403 (-)
LOC110536470 NA coding upstream 371991 80469672 ~ 80483518 (-)
LOC118937419 LOC106570906 coding upstream 590145 80687826 ~ 80689436 (-)
LOC110536477 LOC106570914 coding upstream 622945 80720626 ~ 80772588 (-)
G1022392 NA non-coding downstream 38574 80057847 ~ 80058471 (-)
G1022390 NA non-coding downstream 44092 80051190 ~ 80052953 (-)
G1022386 NA non-coding downstream 52356 80044461 ~ 80044689 (-)
G1022385 NA non-coding downstream 53211 80042496 ~ 80043834 (-)
G1022384 NA non-coding downstream 56373 80040430 ~ 80040672 (-)
G1022399 NA non-coding upstream 2501 80100182 ~ 80100663 (-)
G1022415 NA non-coding upstream 19589 80117270 ~ 80118404 (-)
G1022416 NA non-coding upstream 22144 80119825 ~ 80120283 (-)
G1022397 NA non-coding upstream 32216 80129897 ~ 80138299 (-)
G1022395 LOC106570911 non-coding upstream 50879 80148560 ~ 80159395 (-)
G1021853 NA other downstream 391323 79705219 ~ 79705722 (-)
G1021664 NA other downstream 673566 79422510 ~ 79423479 (-)
G1021129 NA other downstream 1462644 78633621 ~ 78634401 (-)
G1021084 NA other downstream 1530198 78553628 ~ 78566847 (-)
G1022578 NA other upstream 373758 80471439 ~ 80473767 (-)
G1022584 NA other upstream 390873 80488554 ~ 80489044 (-)
G1022604 NA other upstream 442771 80540452 ~ 80540979 (-)
G1023036 NA other upstream 796221 80893902 ~ 80898003 (-)

Expression


Co-expression Network