G1022397


Basic Information

Item Value
gene id G1022397
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 80129897 ~ 80138299 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1163275
gacagtgagattCCGACACTTCACCAAAATATTTACACTACGCTGCTGTTAAACCCCATTTTAAATCAGCAGAGAAATTCCAGATGAACAAAATAGGACAAATCAAATCCATGTAAAAAACAGTATTAAGTGGTTAAAGAATCTGAGGTCCAGGCACTCAGATGGTACAGATCTGATTCTGAGACCGGGCTGATACACACAGCAGCACCAACAGGCTACAGACAGCCAACAACTGCATGATGGAAGaggacctgagccctaggaccatgcctcaggactacctggcatgatgactccttgctgtccccagtccacctggccgtgctgctgctccagtttcaactgttctgcctgtgattattactatttgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggtcacccctcatagcctggttcctctctaggtttcttcctaggtttttggcctttctagggagtttttccctagccaccgtgcttctacacctgcattgcttgctgtttggggtttttaggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctatataaataaatttga
>TU1163280
gacagtgagattCCGACACTTCACCAAAATATTTACACTACGCTGCTGTTAAACCCCATTTTAAATCAGCAGAGAAATTCCAGATGAACAAAATAGGACAAATCAAATCCATGTAAAAAACAGTATTAAGTGGTTAAAGAATCTGAGGTCCAGGCACTCAGATCTGATTCTGAGACCGGGCTGATACACACAGCAGCACCAACAGGCTACAGACAGCCAACAACTGCATGATGGAAGaggacctgagccctaggaccatgcctcaggactacctggcatgatgactccttgctgtccccagtccacctggccgtgctgctgctccagtttcaactgttctgcctgtgattattactatttgaccatgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctccacccggcacagccagaagaggactggtcacccctcatagcctggttcctctctaggtttcttcctaggtttttggcctttctagggagtttttccctagccaccgtgcttctacacctgcattgcttgctgtttggggtttttaggctgggtttctgtacagcactttgagatatcagctgatgtacgaagggctatataaataaatttga
>TU1163276
TTACATCTGGCCCCTACCTCTGGCTGGGCTGGGCACATCAATGTGATTGGCTTGTGTCAGATAGGGATGAGGAGGTGTGGTTGGGGTCTCTCACCACGTCCCTGTTGCAGTCTTCTAGGGGTTCGTCTGAGCAGCATTGGATGCCCATGGTGAAGGCTTCCGCAACCAGGGGCACCACGTCATCCAACAAACTATCTGGAAGGTTCTGAGCCAGCCCTACTagtgccctacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaacacctgtCACAACTCTCCTTACCCGGCAATAGATAACAGTCAAACTCCAGCCAACAAGTTTAAAAATGTCAAAGGTGAAACCAAATGTCCCAGATAgataggcaaacacacacacacacacacacacacacacacgcacacacgcacacaccacacacacacagtatgcacacacacacaccacacgcacacagcatgcacacacacacatacacacacacacacacacacacagcatgcacacacacccacaccacacgcacacagcatgcacacacacacatacacacacacacacacacagcacgcgcacacacacacacacacacacacagacagacagtgagattCCGACACTTCACCAAAATATTTACACTACGCTGCTGTTAAACCCCATTTTAAATCAGCAGAGAAATTCCAGATGAACAAAATAGGACAAATCAAATCCATGTAAAAAACAGTATTAAGTGGTTAAAGAATCTGAGGTCCAGGCACTCAGGTGAGTTTGAAAACAAAGGCAGTGATTAAATAAAAGCTTTTTACAGCTTTACTCACGTAGATTTACTCACGTAGATTTACTCACGTAGATTTACTCACATAGATTTACTCACATAGATTTACTCACATAGATTTACTCACAAAGAGTTACTCACATAGATTTACTCACATAGATTTACTCACATAGATTTACTCACAAAGAGTTACTCACAAAGAGTTACTCACATAGATTTACTCACATAGATTTACTCACATAGATTTACTCACGTAGATTTACTCACATAGATTTACTCACATAGAGTTACTCACATAGATTTACTCACAGAGTTACTCACATAGCCTTGAATCCATCTTTCTTGGCCTCTGTGAAGATGGTACAGATCTGATTCTGAGACCGGGCTGATACACACAGCAGCACCAACAGGCTACAGACAGCCAACAACTGCATGATGGAAGGTAAGACTCGCggacggagggatggatggaagaggGGATCTAGCGATTGAGCCCAAGAGCAGAGAGACACGGGGCTTCTTTATACTTTTGTAGAATTTTTCAGTTGTCAATCATTagctaacctctctctctctttctcatttgaGTCTGTCTGTCACACAGTGGTCTCTCAGTACACACTACTGGTCAGATTAAATGTTTTCTTAGTTAGTTATATGGAAATCCAACC
>TU1163278
TTACATCTGGCCCCTACCTCTGGCTGGGCTGGGCACATCAATGTGATTGGCTTGTGTCAGATAGGGATGAGGAGGTGTGGTTGGGGTCTCTCACCACGTCCCTGTTGCAGTCTTCTAGGGGTTCGTCTGAGCAGCATTGGATGCCCATGGTGAAGGCTTCCGCAACCAGGGGCACCACGTCATCCAACAAACTATCTGGAAGGTTCTGAGCCAGCCCTACTagtgccctacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaacacctgtCACAACTCTCCTTACCCGGCAATAGATAACAGTCAAACTCCAGCCAACAAGTTTAAAAATGTCAAAGGTGAAACCAAATGTCCCAGATAgataggcaaacacacacacacacacacacacacacacacgcacacacgcacacaccacacacacacagtatgcacacacacacaccacacgcacacagcatgcacacacacacatacacacacacacacacacacacagcatgcacacacacccacaccacacgcacacagcatgcacacacacacatacacacacacacacacacagcacgcgcacacacacacacacacacacacagacagacagtgagattCCGACACTTCACCAAAATATTTACACTACGCTGCTGTTAAACCCCATTTTAAATCAGCAGAGAAATTCCAGATGAACAAAATAGGACAAATCAAATCCATGTAAAAAACAGTATTAAGTGGTTAAAGAATCTGAGGTCCAGGCACTCAGGTGAGTTTGAAAACAAAGGCAGTGATTAAATAAAAGCTTTTTACAGCTTTACTCACGTAGATTTACTCACGTAGATTTACTCACGTAGATTTACTCACATAGATTTACTCACATAGATTTACTCACATAGAGTTACTCACATAGATTTACTCACAGAGTTACTCACATAGCCTTGAATCCATCTTTCTTGGCCTCTGTGAAGATGGTACAGATCTGATTCTGAGACCGGGCTGATACACACAGCAGCACCAACAGGCTACAGACAGCCAACAACTGCATGATGGAAGGTAAGACTCGCggacggagggatggatggaagaggGGATCTAGCGATTGAGCCCAAGAGCAGAGAGACACGGGGCTTCTTTATACTTTTGTAGAATTTTTCAGTTGTCAATCATTagctaacctctctctctctttctcatttgaGTCTGTCTGTCACACAGTGGTCTCTCAGTACACACTACTGGTCAGATTAAATGTTTTCTTAGTTAGTTATATGGAAATCCAACC
>TU1163279
gacagtgagattCCGACACTTCACCAAAATATTTACACTACGCTGCTGTTAAACCCCATTTTAAATCAGCAGAGAAATTCCAGATGAACAAAATAGGACAAATCAAATCCATGTAAAAAACAGTATTAAGTGGTTAAAGAATCTGAGGTCCAGGCACTCAGATGGTACAGATCTGATTCTGAGACCGGGCTGATACACACAGCAGCACCAACAGGCTACAGACAGCCAACAACTGCATGATGGAAGGTAAGACTCGCggacggagggatggatggaagaggGGATCTAGCGATTGAGCCCAAGAGCAGAGAGACACGGGGCTTCTTTATACTTTTGTAGAATTTTTCAGTTGTCAATCATTagctaacctctctctctctttctcatttgaGTCTGTCTGTCACACAGTGGTCTCTCAGTACACACTACTGGTCAGATTAAATGTTTTCTTAGTTAGTTATATGGAAATCCAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1163275 False 639 lncRNA 0.46 3 80129897 80137662
TU1163280 False 630 lncRNA 0.46 3 80129897 80137662
TU1163276 False 1482 lncRNA 0.44 2 80136734 80138299
TU1163278 False 1314 lncRNA 0.46 2 80136734 80138299
TU1163279 True 475 lncRNA 0.43 2 80136734 80137662

Neighbor

gene id symbol gene type direction distance location
mthfd2l LOC106570897 coding downstream 2070 80101077 ~ 80127827 (-)
LOC118937416 epgn coding downstream 39619 80083983 ~ 80090278 (-)
areg hbegf coding downstream 66869 80045697 ~ 80063028 (-)
LOC110535132 LOC106570901 coding downstream 122247 80005383 ~ 80007650 (-)
LOC110535133 LOC106570898 coding downstream 144984 79881016 ~ 79984913 (-)
LOC110536467 LOC106570909 coding upstream 167263 80305562 ~ 80320403 (-)
LOC110536470 NA coding upstream 331373 80469672 ~ 80483518 (-)
LOC118937419 LOC106570906 coding upstream 549527 80687826 ~ 80689436 (-)
LOC110536477 LOC106570914 coding upstream 582327 80720626 ~ 80772588 (-)
LOC118937420 NA coding upstream 636350 80774649 ~ 80776505 (-)
G1022416 NA non-coding downstream 9614 80119825 ~ 80120283 (-)
G1022415 NA non-coding downstream 11493 80117270 ~ 80118404 (-)
G1022399 NA non-coding downstream 29234 80100182 ~ 80100663 (-)
G1022413 NA non-coding downstream 32216 80097045 ~ 80097681 (-)
G1022392 NA non-coding downstream 71426 80057847 ~ 80058471 (-)
G1022395 LOC106570911 non-coding upstream 10261 80148560 ~ 80159395 (-)
G1022400 LOC106570911 non-coding upstream 12367 80150666 ~ 80152976 (-)
G1022431 NA non-coding upstream 35993 80174292 ~ 80225563 (-)
G1022449 NA non-coding upstream 61653 80199952 ~ 80289564 (-)
G1022461 NA non-coding upstream 69893 80208192 ~ 80208461 (-)
G1021853 NA other downstream 424175 79705219 ~ 79705722 (-)
G1021664 NA other downstream 706418 79422510 ~ 79423479 (-)
G1021129 NA other downstream 1495496 78633621 ~ 78634401 (-)
G1021084 NA other downstream 1563050 78553628 ~ 78566847 (-)
G1022578 NA other upstream 333140 80471439 ~ 80473767 (-)
G1022584 NA other upstream 350255 80488554 ~ 80489044 (-)
G1022604 NA other upstream 402153 80540452 ~ 80540979 (-)
G1023036 NA other upstream 755603 80893902 ~ 80898003 (-)

Expression


Co-expression Network