XLOC_002905 (sparta)


Basic Information

Item Value
gene id XLOC_002905
gene name sparta
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 34889328 ~ 34916208 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005368
AAATTAGCAGCACTCTGGATAAGCAAGTGGGCCACGCTTTACGTGCGTTTTACGCACTCAACTTTTTTGTTTAATCGTTTCACAATTTCAGCTCGGACTGTGCGTTTACAAACGCGAGCATGCAGACGCCTGAACCCGCCGAAATTCGTGTCATTCGCGAGAACTACGATAAAGCTCTGCAGTGTCTGAATACCGGACTTCAGTTAGATGAAGCTGGCAATAAAGACCAGGCTCTGGTCCTGTACAGGCTGGGCCGGCGGCACCTGCTCAGTGGGTTGCAGGTGGACACACGGGGCGGGCGCTGCACCGGCCGCTGCTGGGACTCTGCCCGACAAACGCAGCTGAAGATGGGAGAGACTCTGCGCACCATCACTGCTCGCCTCGGGGCTCTAGAGTCCGCTTCAAACACGGGTCAGAGACTTTATCCGACTCTCCCTGTCTTCCAGGACAAGAACTCCCAGAGAGCATTTAACAGCAGAGGGGCCTCAGGAAGGGCCCCTTCTCGCCCTGTTTCCCCTCCAGTGGGCTTCGCGGTGCCTAATGAACTCCCACCAGCCTACACTCCTCAGCCAACAGACGGGCATCTGTCACTCTCTCATGGAGCCAACAGAGCGTTTCCAGATGCCCCACACCAGGGGTCCCGGCGTCAGGCTGTGGCCCCGGTCAATCTCAGAGAGGCCGGGATGGAGATTATGTTCTTGCCCAGCGGGGTGCAGATGTTTTTTGTGTCTGCTGAGGGTCGGGTCACTGCACCTTCTTATCCAGGGTACCTGAGGATCATCATATACAGCCAGGACTCGGATGGCAGTGCCAACACTGGCTATGCTCCAGCTTACCTGCAGGTTTGTGACTGGATCTACCCGCTGTATCCAGACTTTCCTGTCTTGCTGAGCAACAATGGTGTGTTCACCTTTCCTGACACCACTGCAGCGGTGCCGGGGTCCTACGTTGGAGTGGTGCTGTCCTCAGATCTACCAGCAGGGGAGAGAGATCTGTTCCAGGAGCAGCTGTCAGTGTTGGCGCAGCTCCGGGTCCAGGTAGATGAAGAAGGCGGCGGCGCTACAGGAGCAGACACAAACCTGAGTGAAAAGATTCCTCTATCAGAAGCATCTCAAACGCCAGAGGAGAAAACTGCCCCTGTGTGGAGCGAAAAGATGTCACAGAGCATCCTAGCAGGCTCCTCTTGGCTGGGTCGGGGTCTTGTGCGAGGAGCTGAAGCGACTGGTAAAGCCATTCAGAGAGGGGGGACTAAGCTGCGAGACAACATCACCCCAGAGGAGACTCCAGCAGAGGTCAGTCCTAAAGTCACCAAAGGCCTCAACGCAGCCAAACAGGCCACTGGCGGAGCGGTCAAAGTCAGCCAGTTTCTGGTGGACGGTGTTGCTGCCGTAGCGGGTAAAGTTGGGAAGGAACTCGCTCCACATGTAAAAAAACACGGTTGCAAACTCATCCCTGAGTCCCTCAAGAAAGGCAAAGATGGCAGCTCCAAAATGGATGGAGCCAAACTCGTGGCTGGAAGCAGCATACAAGGTTTATCGACTCTCTGGTCAAGTCTGGAAACAGCAGGAAAGACTATCGGGAAAAGTTTATCATCAGAGACGGTAACCACTGTGAGGCACAAGTATGGAGACGAGGCAGGACAAGCGGCAGACACTGCAGTCCAGTCTACTGTCAATGTGGGGGTCACAGCATTTAATATGGACAATGTGTGCCTCAAGGGTGTGCTGAAGGCCACAGGCAAACAGACTACAAAGGAAATAGTCAAAGACACGCCAAAAGGAGAAAAAACTGAGGACAAAGACAAGTCACCAAAGAAAAGATGAGGGAAAAATGACTTGCATGAATTATCATGTATGTTCTTGTAGCACACATCAGTACTTTTGCATTGATGATGAAATATCATGCTGTGatgtttacataattattttattatattaatgaaatgtatatttagttttacattttcgTAATGTTATTCTGAGGATTATAGAAGGAAAACATAAGTATTATGTTGTGATGTTTCCAGAAAATAAGCTTATATTAGTGAAACAAATGTTAAACTCTCAGTACAAAAACAATTATATCCATAATGATATTGGAAGGGTTATATTTATATACGGAAAACCTTTTACCTTGTTTGAATCATTGTATGTCATCAGGattaatataaatgatatattaCTTTTAA
>TCONS_00005369
cttAATAAGGATAATTTAAAAAATCGTTTTTTGTGTCTCTCCACtacagcttggtcccgcattcatttcaaaggagcgctaccctgtactaaaatgtcGGCTCTATCGACGCATTCCTTCTAATAAACAACAACAGgataggcgacatctaatgtatatatatctatataactGCAGCGCATACATACCGCGTTTCCATGGTTGCGTTGTTGTCGAAACATTATTTGCAACACCTGAGAAATGCAACACTAATTAGGTAAACCATCAACTAGCCTCATGTTGATTGGCCACCTGCAAGTATAAATGAGTTAGCGTGAAACTcacttgtaaagcactttaaccaatccactGAAAGTtcatacgtttaaaaaaaaaagtttgacgaTATAAAAGGTTTGTTTTGAATGGTTCGGTTTTAAATATTAACTTTAATTTATTACACaacatcttgaaaaaaatctCGATTTTGACAGATGTCTTCGCGCAGTTTTGCTCCTCTTTCCAGTCGTCAGGAGAACATTTTAGGAAGAGCGGAAGGCCTGCGCCAGCTCAAGCCCGGCCAAAGAATTGTGCTCGGTGTTTTGACCGAGAATGAGCAGCATAATCGAATATTTGGACAGGTTGCGTCCAAATATGAGACAACGCTCCAGGAGGTGTCTAAGCGTGACGTCAGTACGTTCAGAGCGTCAATTGGTGATAGTGTGATTGAGACAGCCACTGTACAGTCAGTCAAGTCAACATCATTCCtgctgccttcagaactgctagTACTCGACGATGCTGTTCAAGATATTGGCTCAGGGTCATTTATGGATTCATCCATGCATTCATTGGCTGATGAAGAAGCTGCTTCCTCTGAGGACGTCTTGTGTGTTTCTGAATATGCTGAGGACATCCACAGATACCTGCGTGAATGCGAAGTTAAATACAGACCAAAACCCGGCTATATGAGAAAGCAGCCTGACATAACCAACTGCATGAGGGTCATTCTTGTGGACTGGCTGGTGGAAGTTGGCGAAGAATACAAGCTGTGCTCTGAGACCCTGTACCTGGCTGTCAATTACCTGGACCGCTTTCTTTCGTGCATGTCTGTCCTGAGAGGAAAACTGCAGCTTGTGGGGACGGCTGCAATACTCCTGGCTGCCAAATACGAGGAAGTGTATCCTCCAGAGGTGGATGAGTTTGTCTACATCACGGATGACACCTATACAAAGAAACAGCTGCTTCGGATGGAGCAGCACCTGCTCCGAGTGCTTGCGTTTGACATGACCGCTCCCACAATCCACCAGTTTCTGATGCAGTACAGTTTGGAGGAGCATGTCTGCGCCAGAACTCTAAACCTCGCTCTGTATCTCTCAGAACTGAGCTTGCTTGAGGTGGATCCTTTTGTGCAATATCTGCCATCCAAGACCGCTGCTGCAGCATATTGTCTGGCCAACTACACTCTAAATGGGGCTTTGTGGcctGAGAATCTGTATGCCTTTACTGGTTACTCTCTGGCTGTGATTGGCCCGTGTTTGAAAGAGCTTCATAAGCTCCATCTCGGGGCTGGAAGTCGCCCTCAACAGGCCATCCAGGAGAAGTACAAGAGCTCGAAATATCATGGAGTGTCCCAGTTGGAACCTGTAGAGACTCTGCCGCTGCCCTGACGTTCTGGTGACTACAAGTCCCCTTATGCCGACAAATGAACTGCAGCGCTTGAGTCTATTGTAAATATTgagtgaaattgtttttaaatgtggttttaactttttttttaaaatgtgatttttatcATAGGGTGCACGATTATAAAGCGATCCAATAAAATGGTGTGACTTGTTTCTCTTTAAATCCAACATGCTGTTGGTGTGAAGGCTGTATGTTGCCATAAGTAATGGCTTGAGATGAACTAATGGTTTTGTACCACTACCTTTTTTTAGGGTGTCTGTTCGGATATACCATGTATTTTACCTGTATAGTATGTGCAATATCATGTGCTCCATActgcattttaataaatgaaacaagTTGCAGTATTGCTTCAGTTCTGTCTGGTATACTTGTGTATGGCGACCTCTAGCCTTCAATGTCTGAATCGCAATTCTCCCAAACAAATTGTGAACTTCTGCTTAAGTGAATTAACATTAATTCTTTATTGGTTGTAAGCCTAGTTTATTGTACACAAGGTGTTCTAAACATCGCCGGTAACTGGCACCTATTGACTGGTAACAGGAAATTACTATGGGTGTTTTataccagatttttttttcttaattcaaGAAGCAAGCACAGATTAAAAAACTAACGACTAACATGGTAAATATTCCTTTACAACGTTGTAATCGCACCAGTTTATTCACCCAACAGTCTGGGTTTCATTCCCATAACTtatgtttaagtttctttcatctgttaaactgaTACCAAAGCTGTAAAAACtgcaaccactgacttccacagtgtTTTTCTACTATTGATGTGGTTACAGGTGTCTTCTCCCCCAAAATATATTTCCTTCAACGGGAAAAAAACCCAAAAGTAGGAAATTAAGAAGTGTCATATTTGGGTAAACGAACCATTAAATCCTTCATAACCACTACACGACCAGCTGCTAACGTGTACTCTTTATACTAAGGTTACGTTCGTCCTACTTAGTTAGACAACCTCTGCTTTTTTTCTATATGACGAGCTAGTCTCAGTGACTGCTATGCTTCTCAACTACGAAATATGTCACATCAATGTAAACCTTTGTTGCGCGCTTTCAGctgttaaaatattttgtttgcgTGTGTGAGAACAGCTTGAACTTTAATTACGCATTTCAGTAATCTAGTTGAACCTGCTTGGTGACAATACATCATTTAGTCAAGAGTCATCATGGTAGAGAAATGTGCTCGTTAATAAATTAGCAGCACTCTGGATAAGCAAGTGGGCCACGCTTTACGTGCGTTTTACGCACTCAACTTTTTTGTTTAATCGTTTCACAATTTCAGCTCGGACTGTGCGTTTACAAACGCGAGCATGCAGACGCCTGAACCCGCCGAAATTCGTGTCATTCGCGAGAACTACGATAAAGCTCTGCAGTGTCTGAATACCGGACTTCAGTTAGATGAAGCTGGCAATAAAGACCAGGCTCTGGTCCTGTACAGGCTGGGCCGGCGGCACCTGCTCAGTGGGTTGCAGGTGGACACACGGGGCGGGCGCTGCACCGGCCGCTGCTGGGACTCTGCCCGACAAACGCAGCTGAAGATGGGAGAGACTCTGCGCACCATCACTGCTCGCCTCGGGGCTCTAGAGTCCGCTTCAAACACGGGTCAGAGACTTTATCCGACTCTCCCTGTCTTCCAGGACAAGGTACAAACAAATTGAATATATAACTCATAAATTATATATCTACATATCAGTAGGCCAAAGTGCTACAATAGTGTGTAAATAGCCtatactaaaatgttttttttttctttctttttttttttaaacaagtgctTTTGTTGGATATTCTTAAAATAGCATCAATTGGGTAGGAATTTAACTTTTTAATCTTGTGCAAGTAACTTTTATCCAGCTCTACCTGTCTTCCAGAACTCCCAGAGAGCATTTAACAGCAGAGGGGCCTCAGGAAGGGCCCCTTCTCGCCCTGTTTCCCCTCCAGTGGGCTTCGCGGTGCCTAATGAACTCCCACCAGCCTACACTCCTCAGCCAACAGACGGGCATCTGTCACTCTCTCATGGAGCCAACAGAGCGTTTCCAGATGCCCCACACCAGGGGTCCCGGCGTCAGGCTGTGGCCCCGGTCAATCTCAGAGAGGCCGGGATGGAGATTATGTTCTTGCCCAGCGGGGTGCAGATGTTTTTTGTGTCTGCTGAGGGTCGGGTCACTGCACCTTCTTATCCAGGGTACCTGAGGATCATCATATACAGCCAGGACTCGGATGGCAGTGCCAACACTGGCTATGCTCCAGCTTACCTGCAGGTAAACACCAGCACAAATGCAGTAGTCAACAATCAAACTGAATCAAAAATGTTATTCAGAATTGTCCAAGTACAAGAATGGGAGTTGTTCAATACTTTTTGGACAACTTCGAAGAAAGTCTGTTTCGTTGTTCACcagtgaacttatttttcttattctccatttattgttatataaattgaaaaaagataataaagccaaataaaataaaatgcactaaataattattcattggatttacttttttaaggtaagtggttgcaaatagtttatatgggctgaatttaagttgagcattactaaatataatgtgtttgtttaaattcagggttgcagctggaagggcatccactgcgtaaaacatatgctggataagttggcggttcattccactgtggcgaaccctgattgaTTAAAgagaccaagcc
>TCONS_00005370
TTGCAACACCTGAGAAATGCAACACTAATTAGGTAAACCATCAACTAGCCTCATGTTGATTGGCCACCTGCAAGTATAAATGAGTTAGCGTGAAACTcacttgtaaagcactttaaccaatccactGAAAGTtcatacgtttaaaaaaaaaagtttgacgaTATAAAAGATGTCTTCGCGCAGTTTTGCTCCTCTTTCCAGTCGTCAGGAGAACATTTTAGGAAGAGCGGAAGGCCTGCGCCAGCTCAAGCCCGGCCAAAGAATTGTGCTCGGTGTTTTGACCGAGAATGAGCAGCATAATCGAATATTTGGACAGGTTGCGTCCAAATATGAGACAACGCTCCAGGAGGTGTCTAAGCGTGACGTCAGTACGTTCAGAGCGTCAATTGGTGATAGTGTGATTGAGACAGCCACTGTACAGTCAGTCAAGTCAACATCATTCCtgctgccttcagaactgctagTACTCGACGATGCTGTTCAAGATATTGGCTCAGGGTCATTTATGGATTCATCCATGCATTCATTGGCTGATGAAGAAGCTGCTTCCTCTGAGGACGTCTTGTGTGTTTCTGAATATGCTGAGGACATCCACAGATACCTGCGTGAATGCGAAGTTAAATACAGACCAAAACCCGGCTATATGAGAAAGCAGCCTGACATAACCAACTGCATGAGGGTCATTCTTGTGGACTGGCTGGTGGAAGTTGGCGAAGAATACAAGCTGTGCTCTGAGACCCTGTACCTGGCTGTCAATTACCTGGACCGCTTTCTTTCGTGCATGTCTGTCCTGAGAGGAAAACTGCAGCTTGTGGGGACGGCTGCAATACTCCTGGCTGCCAAATACGAGGAAGTGTATCCTCCAGAGGTGGATGAGTTTGTCTACATCACGGATGACACCTATACAAAGAAACAGCTGCTTCGGATGGAGCAGCACCTGCTCCGAGTGCTTGCGTTTGACATGACCGCTCCCACAATCCACCAGTTTCTGATGCAGTACAGTTTGGAGGAGCATGTCTGCGCCAGAACTCTAAACCTCGCTCTGTATCTCTCAGAACTGAGCTTGCTTGAGGTGGATCCTTTTGTGCAATATCTGCCATCCAAGACCGCTGCTGCAGCATATTGTCTGGCCAACTACACTCTAAATGGGGCTTTGTGGcctGAGAATCTGTATGCCTTTACTGGTTACTCTCTGGCTGTGATTGGCCCGTGTTTGAAAGAGCTTCATAAGCTCCATCTCGGGGCTGGAAGTCGCCCTCAACAGGCCATCCAGGAGAAGTACAAGAGCTCGAAATATCATGGAGTGTCCCAGTTGGAACCTGTAGAGACTCTGCCGCTGCCCTGACGTTCTGGTGACTACAAGTCCCCTTATGCCGACAAATGAACTGCAGCGCTTGAGTCTATTGTAAATATTgagtgaaattgtttttaaatgtggttttaactttttttttaaaatgtgatttttatcATAGGGTGCACGATTATAAAGCGATCCAATAAAATGGTGTGACTTGTTTCTCTTTAAATCCAACATGCTGTTGGTGTGAAGGCTGTATGTTGCCATAAGTAATGGCTTGAGATGAACTAATGGTTTTGTACCACTACCTTTTTTTAGGGTGTCTGTTCGGATATACCATGTATTTTACCTGTATAGTATGTGCAATATCATGTGCTCCATActgcattttaataaatgaaacaagTTGCAGTATTGCTTCA
>TCONS_00005371
acttgtaaagcactttaaccaatccactGAAAGTtcatacgtttaaaaaaaaaagtttgacgaTATAAAAGGTTTGTTTTGAATGGTTCGGTTTTAAATATTAACTTTAATTTATTACACaacatcttgaaaaaaatctCGATTTTGACAGATGTCTTCGCGCAGTTTTGCTCCTCTTTCCAGTCGTCAGGAGAACATTTTAGGAAGAGCGGAAGGCCTGCGCCAGCTCAAGCCCGGCCAAAGAATTGTGCTCGGTGTTTTGACCGAGAATGAGCAGCATAATCGAATATTTGGACAGGTTGCGTCCAAATATGAGACAACGCTCCAGGAGGTGTCTAAGCGTGACGTCAGTACGTTCAGAGCGTCAATTGGTGATAGTGTGATTGAGACAGCCACTGTACAGTCAGTCAAGTCAACATCATTCCtgctgccttcagaactgctagTACTCGACGATGCTGTTCAAGATATTGGCTCAGGGTCATTTATGGATTCATCCATGCATTCATTGGCTGATGAAGAAGCTGCTTCCTCTGAGGACGTCTTGTGTGTTTCTGAATATGCTGAGGACATCCACAGATACCTGCGTGAATGCGAAGTTAAATACAGACCAAAACCCGGCTATATGAGAAAGCAGCCTGACATAACCAACTGCATGAGGGTCATTCTTGTGGACTGGCTGGTGGAAGTTGGCGAAGAATACAAGCTGTGCTCTGAGACCCTGTACCTGGCTGTCAATTACCTGGACCGCTTTCTTTCGTGCATGTCTGTCCTGAGAGGAAAACTGCAGCTTGTGGGGACGGCTGCAATACTCCTGGCTGCCAAATACGAGGAAGTGTATCCTCCAGAGGTGGATGAGTTTGTCTACATCACGGATGACACCTATACAAAGAAACAGCTGCTTCGGATGGAGCAGCACCTGCTCCGAGTGCTTGCGTTTGACATGACCGCTCCCACAATCCACCAGTTTCTGATGCAGTACAGTTTGGAGGAG

Function

symbol description
sparta Predicted to be involved in cell division and negative regulation of BMP signaling pathway. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in Troyer syndrome. Orthologous to human SPART (spartin).

GO:

id name namespace
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0051301 cell division biological_process
GO:0005886 plasma membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040311-2 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in mitotic cell cycle phase transition and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to be part of cyclin A2-CDK2 complex. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human CCNA1 (cyclin A1).
ZDB-GENE-080204-37 Predicted to be involved in cell division and negative regulation of BMP signaling pathway. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in Troyer syndrome. Orthologous to human SPART (spartin).

Ensembl:

ensembl_id ENSDARG00000043236 ENSDARG00000068782

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005368 False 2188 mRNA 0.49 8 34889328 34907477
TCONS_00005369 False 4382 mRNA 0.43 8 34905980 34916208
TCONS_00005370 False 1722 mRNA 0.45 9 34908336 34915984
TCONS_00005371 True 994 mRNA 0.46 5 34911890 34915886

Neighbor

gene id symbol gene type direction distance location
XLOC_002904 ccdc169 coding downstream 275 34872195 ~ 34889053 (-)
XLOC_002903 dclk1a coding downstream 17591 34737322 ~ 34871737 (-)
XLOC_002902 BX510654.1 coding downstream 561934 34327262 ~ 34327394 (-)
XLOC_002901 pimr167 coding downstream 646059 34220492 ~ 34243269 (-)
XLOC_002899 pimr148 coding downstream 688578 34187231 ~ 34200750 (-)
XLOC_002906 CT573139.2 coding upstream 34852 34951060 ~ 34959178 (-)
XLOC_002907 smad9 coding upstream 44543 34960751 ~ 35002731 (-)
XLOC_002908 supt20 coding upstream 95886 35012094 ~ 35052198 (-)
XLOC_002909 NA coding upstream 138073 35054281 ~ 35058444 (-)
XLOC_002910 C10H21orf91 coding upstream 143648 35059856 ~ 35108683 (-)
XLOC_002900 NA non-coding downstream 690762 34196782 ~ 34198566 (-)
XLOC_002891 BX569785.1 non-coding downstream 1008964 33876131 ~ 33880364 (-)
XLOC_002890 NA non-coding downstream 1224539 33663165 ~ 33664789 (-)
XLOC_002885 dre-mir-130a non-coding downstream 1512114 33377130 ~ 33377214 (-)
XLOC_002912 BX465844.1 non-coding upstream 243802 35160010 ~ 35164291 (-)
XLOC_002917 NA non-coding upstream 396684 35312892 ~ 35321637 (-)
XLOC_002919 NA non-coding upstream 513296 35429504 ~ 35431655 (-)

Expression


Co-expression Network