G1022493


Basic Information

Item Value
gene id G1022493
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 80271101 ~ 80272682 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1163414
cccgactagGGAACtcagtctcaacttactgttcAAAGTTAGAATAATAGAAATACACAAGGCACAATTTggtcatttggttgtgcatcagcggTCACTCAATCAGTCCATGTCAGATAAAATGCTTTAGATTGGTGAATGAGTCTAGCagacagctatctaaacttgtagtaatcacgGTCCAATTACCAACCAGGACGGGGCCCATTGATCCTCAGTTATCATGTTAAATAGGATGTGGGTACACGAGCCACTGCGGCCTACCACGATGAGTTTCATTTCCTCTGTGACCCCAAACCCCCCCcctatcaaagttgcccatccatGATCTAGATTCCAGAGGGTTCTAGAGTAGAGGGGTTCTATAGTGAGGATCAGGACAATAGAGTAGAGAAGGGTTGAGGACTGGGTTCCTAGCAGTGGTTCTACAGCGGTGTTTGGTTGGTTCAGTTCAGAAGACAAAGGGTTCACGCAGACTCATcaggcagtcagacaggcagtcagacaggcaagcagtcagacaggcagtcagacaggcaagcagtcagacaggcagtcagacaagcagtcagacaggcaggcagtcagacaggcagacagacaggcaggcagtcagacaggcaggcagtcagacaggcaggcagtcagacaggcagtcagacaggcaagcagtcagacaggcaagcagtcagacagGCAAgcagtcagacaggcagtcaaacagacaggcagacagacaggcagacagacaggcagacaaagtGTATGAAGAGGAAGTCTATGAGTTTGTTTGTGCATTCCACTCTACATGCATGAGTCTATCAATCTGAAACACCAAGTCCACTATGCCAGTATGTGTATGCATTGACATATCTGGGATTTCATATAGgctacatacaggtaactgccaataTAAAGGAAACCTcaccataaagtgtcttaatagggcgatGGGCCACTACGACCCAACAACTTCAATGAGCTTTGGGCACAGATTCCACAGGTGTCTgcaactctattggagggatgagacaccattcttccacgagaaactCCATAATTTGGTGATTTGTTGATGTTGGTAgaaaacacattttgttacattaaagg

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1163414 True 1110 lncRNA 0.47 2 80271101 80272682

Neighbor

gene id symbol gene type direction distance location
mthfd2l LOC106570897 coding downstream 143274 80101077 ~ 80127827 (-)
LOC118937416 epgn coding downstream 180823 80083983 ~ 80090278 (-)
areg hbegf coding downstream 208073 80045697 ~ 80063028 (-)
LOC110535132 LOC106570901 coding downstream 263451 80005383 ~ 80007650 (-)
LOC110535133 LOC106570898 coding downstream 286188 79881016 ~ 79984913 (-)
LOC110536467 LOC106570909 coding upstream 32880 80305562 ~ 80320403 (-)
LOC110536470 NA coding upstream 196990 80469672 ~ 80483518 (-)
LOC118937419 LOC106570906 coding upstream 415144 80687826 ~ 80689436 (-)
LOC110536477 LOC106570914 coding upstream 447944 80720626 ~ 80772588 (-)
LOC118937420 NA coding upstream 501967 80774649 ~ 80776505 (-)
G1022431 NA non-coding downstream 45538 80174292 ~ 80225563 (-)
G1022461 NA non-coding downstream 62640 80208192 ~ 80208461 (-)
G1022395 LOC106570911 non-coding downstream 111706 80148560 ~ 80159395 (-)
G1022400 LOC106570911 non-coding downstream 118125 80150666 ~ 80152976 (-)
G1022397 NA non-coding downstream 132802 80129897 ~ 80138299 (-)
G1022494 NA non-coding upstream 121 80272803 ~ 80273660 (-)
G1022452 NA non-coding upstream 10783 80283465 ~ 80284562 (-)
G1022521 NA non-coding upstream 89115 80361797 ~ 80362041 (-)
G1022532 NA non-coding upstream 112897 80385579 ~ 80440720 (-)
G1022579 NA non-coding upstream 199303 80471985 ~ 80474716 (-)
G1021853 NA other downstream 565379 79705219 ~ 79705722 (-)
G1021664 NA other downstream 847622 79422510 ~ 79423479 (-)
G1021129 NA other downstream 1636700 78633621 ~ 78634401 (-)
G1022578 NA other upstream 198757 80471439 ~ 80473767 (-)
G1022584 NA other upstream 215872 80488554 ~ 80489044 (-)
G1022604 NA other upstream 267770 80540452 ~ 80540979 (-)
G1023036 NA other upstream 621220 80893902 ~ 80898003 (-)
G1023156 NA other upstream 867302 81139984 ~ 81140579 (-)

Expression


Co-expression Network