G1024368


Basic Information

Item Value
gene id G1024368
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 82354214 ~ 82359457 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1165685
ctgtaggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaatgatagataatagacagtaacagcagtatactgtaggtaggggtataggatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaa
>TU1165691
gactaacagggaaatgcttggtaaacaacaggtgtagactaacagtgaaatgcttggtaaacaacaggtgtggactaacagggaaatgcttggtaaacaacaggtgtagactaacagtgaaatgcttggtaaacaacaggtgtagactaacagggaaatgcttggtaaacaacaggtgtagactaacagtgaaatgcttggtaaacaacaggtgtagactaacagtgaaatgcttggtaaacaacaggtgtagactaacagggaaatgcttacttcccaacaacgcagaaagaaagaaaatagagaaataatttaaaaaagaaaatgataacatgaggaataaatacacaatgagtaacaacgATAACTTGCCGAaaatacacggggtaccagtactgagtcgatgtgcaggggtgcgaggtaattgaggtacataatgtatgtacagtacacatAGGTAGAGGTACAGTAACAGCAGGATactataggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaaggacagataatagacagtaacagcagtatactgtaggtaggggtaaatgatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaagga
>TU1165695
gactaacagggaaatgcttggtaaacaacaggtgtagactaacagtgaaatgcttggtaaacaacaggtgtggactaacagggaaatgcttggtaaacaacaggtgtagactaacagtgaaatgcttggtaaacaacaggtgtagactaacagggaaatgcttacttcccaacaacgcagaaagaaagaaaatagagaaataatttaaaaaagaaaatgataacatgaggaataaatacacaatgagtaacaacgATAACTTGCCGAaaatacacggggtaccagtactgagtcgatgtgcaggggtgcgaggtaattgaggtacataatgtatgtacagtacacatAGGTAGAGGTACAGTAACAGCAGGATactataggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatagataatagacagtaacagcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1165685 False 251 lncRNA 0.39 2 82354214 82354558
TU1165691 False 690 lncRNA 0.39 3 82356090 82359457
TU1165695 True 464 lncRNA 0.39 2 82356725 82359457

Neighbor

gene id symbol gene type direction distance location
LOC110536485 NA coding downstream 96757 82252528 ~ 82257457 (-)
LOC110535140 parp8 coding downstream 109040 82160968 ~ 82245174 (-)
LOC118937423 NA coding downstream 194971 82157654 ~ 82159243 (-)
LOC110536483 isl1 coding downstream 426000 81920366 ~ 81928214 (-)
LOC118937459 NA coding downstream 543101 81810059 ~ 81811117 (-)
LOC110536491 LOC106570936 coding upstream 170779 82530236 ~ 82563337 (-)
LOC110536490 zfr coding upstream 222259 82581716 ~ 82619626 (-)
LOC118937424 NA coding upstream 508644 82868101 ~ 82871020 (-)
LOC118937425 NA coding upstream 513265 82872722 ~ 82873724 (-)
LOC100136308 LOC106570939 coding upstream 514322 82873779 ~ 82962031 (-)
G1024359 NA non-coding downstream 25348 82326686 ~ 82328866 (-)
G1024299 NA non-coding downstream 130773 82190375 ~ 82223441 (-)
G1024304 NA non-coding downstream 148852 82204284 ~ 82205362 (-)
G1024294 NA non-coding downstream 177041 82176218 ~ 82177173 (-)
G1024391 NA non-coding upstream 56404 82415861 ~ 82416430 (-)
G1024393 NA non-coding upstream 66642 82426099 ~ 82426671 (-)
G1024401 NA non-coding upstream 80890 82440347 ~ 82441209 (-)
G1024408 NA non-coding upstream 90355 82449812 ~ 82451094 (-)
G1024410 NA non-coding upstream 94453 82453910 ~ 82455412 (-)
LOC110536484 LOC106570928 other downstream 95249 82257489 ~ 82522382 (-)
G1023858 NA other downstream 439847 81912957 ~ 81914367 (-)
G1023618 NA other downstream 736985 81615253 ~ 81617939 (-)
G1023156 NA other downstream 1213635 81139984 ~ 81140579 (-)
G1023036 NA other downstream 1456211 80893902 ~ 80898003 (-)
G1025481 NA other upstream 1202845 83562302 ~ 83565574 (-)
G1025467 NA other upstream 1262266 83544297 ~ 83626790 (-)
G1025498 NA other upstream 1356226 83683265 ~ 83718776 (-)
ypel1 ypel1 other upstream 1514443 83873900 ~ 83903039 (-)
G1026586 NA other upstream 2827869 85187326 ~ 85197500 (-)

Expression


Co-expression Network