G1024458 (LOC106570933)


Basic Information

Item Value
gene id G1024458
gene name LOC106570933
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 82625096 ~ 82627337 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1165804
ctagtggttagagtgtagaggcggcaggtagcctagtggttagagtgtagaggcggcaggtaggctagtggttagagtgtagaggcggcaggtagcctagtggttagagtgttggactagtaaccagcaggtagtctagtggttagaggcaggtagcctagtggttagagcgttggactagtaaccagcaggtagcctagtggttagagggttggactagtaaccagcaggtagcctagtggttagagtgttggactagtaaccagcaggtagcctagtggttagagcgttggactagtaaccagcaggtagcctagtggttagagtgttggactagtaaccagcaggtagcctagtggttagagtgttggactagtaaccagcaggtagcctagtggttagagtgttggactagtaaggttgcaagttcaaacccccgagctgacaaggtacaaattatgtcgttctgcccctgaacaaggcagttaacccactgttcctagaccagttaacccactgttaactaggctgtcattgaaaataatgacttgcctggttaaataaaggtaggaagagaaaaaaaaagaaagtaataTAACCATACCAATCAAACACACATTATCTTCACAGGTCAAAACACAAAGCAATTCTTTCACTGAGCAAACTAAAACAGCACACGCCCAAAATAACTAATTCAACAGAACAGCAAACTTAGAATTATAAAATAATTCAGTCCTTACACAGGTTTTTGGGAAAGTCCAAATGgtaccgtattccctatatagtgcactactttagaccaaggccctatagggaatagggtgcactactttagaccaaggccctatagggaatagggtgcactactttagaccaaggcactatagggaatagggttccatagggccttggtctaaagtagtgcactatatagggaatagtgctccATAGGgccatggtctaaagtagtacactatatagggaatagtgctccatagggccttggtctaaagtagtgcactatatagggaatagggtgccatgtgggacattAAGATCACTAGATAGACAAGCTGGACTGTCAGCACCCTGGGAACGGTCATCATGTTCTCTTGATCGCGTCGTCGATCTCTGACATCTGGTCCTTCAGCTGGGTCCACTGCTCCGGGTTTAAGGAGATACCTTTTTTTGCCAGGCTTCATTTCCCCGTCCTGGTTCATCCAGTACTCTCTGATGTCAACTAAACACTTCCCTTTGAACTCCCTCACGCTGACGTATCGCATTCTCCCAATCTGGAACACACAAAACAGACCAATCAAGCTCACTCTTTTCTTCCCGAGGGACATGTGTTGCCC

Function

NR:

description
Activated RNA polymerase II transcriptional coactivator p15

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1165804 True 1355 lncRNA 0.46 3 82625096 82627337

Neighbor

gene id symbol gene type direction distance location
LOC110536490 zfr coding downstream 5470 82581716 ~ 82619626 (-)
LOC110536491 LOC106570936 coding downstream 61759 82530236 ~ 82563337 (-)
LOC110536484 LOC106570928 coding downstream 102714 82257489 ~ 82522382 (-)
LOC110536485 NA coding downstream 367639 82252528 ~ 82257457 (-)
LOC110535140 parp8 coding downstream 379922 82160968 ~ 82245174 (-)
LOC118937424 NA coding upstream 240764 82868101 ~ 82871020 (-)
LOC118937425 NA coding upstream 245385 82872722 ~ 82873724 (-)
LOC100136308 LOC106570939 coding upstream 246442 82873779 ~ 82962031 (-)
LOC110536507 LOC105014547 coding upstream 436726 83064063 ~ 83288949 (-)
LOC110536498 LOC105030224 coding upstream 714090 83341427 ~ 83361014 (-)
G1024491 NA non-coding downstream 11906 82612772 ~ 82613190 (-)
G1024469 NA non-coding downstream 97681 82527118 ~ 82527415 (-)
G1024447 NA non-coding downstream 112623 82512248 ~ 82512473 (-)
G1024444 NA non-coding downstream 117514 82507201 ~ 82507582 (-)
G1024443 NA non-coding downstream 117917 82506978 ~ 82507179 (-)
G1024459 NA non-coding upstream 1033 82628370 ~ 82629232 (-)
G1024496 NA non-coding upstream 4944 82632281 ~ 82632519 (-)
G1024502 NA non-coding upstream 34696 82662033 ~ 82662821 (-)
G1024504 NA non-coding upstream 38081 82665418 ~ 82665764 (-)
G1024507 NA non-coding upstream 44455 82671792 ~ 82672011 (-)
G1023858 NA other downstream 710729 81912957 ~ 81914367 (-)
G1023618 NA other downstream 1007867 81615253 ~ 81617939 (-)
G1023156 NA other downstream 1484517 81139984 ~ 81140579 (-)
G1023036 NA other downstream 1727093 80893902 ~ 80898003 (-)
G1025481 NA other upstream 934965 83562302 ~ 83565574 (-)
G1025467 NA other upstream 994386 83544297 ~ 83626790 (-)
G1025498 NA other upstream 1088346 83683265 ~ 83718776 (-)
ypel1 ypel1 other upstream 1246563 83873900 ~ 83903039 (-)
G1026586 NA other upstream 2559989 85187326 ~ 85197500 (-)

Expression


Co-expression Network